RchiOBHm_Chr4g0403201
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
22239919 .. 22240158
240 bp
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UTR
Exon/CDS
Intron
PRQ37496

Sequence Viewer

Length: 240 bp
ATGCAGCATAGAAATCTTGTCAAGGTCATAACTATATGTTCAAACCCCGACATAAGGGCTTTGCTGCTAGAATATATGTCTAATGGAAGCCTAGAGAAGTGGCTATACTGCAGACTGCACAACTACTGTCTAAATCTTCTACAAAGAGTGAACATTTTGGTTGATATTTCATCTGCTTTGGAGTATCTCCATCACTGTCAACTAGAAGTTGTTGTGCACTGTGATTTAAAGCCTAGCTAG

Protein Analysis

79

Amino Acids

9.23

Weight (kDa)

6.94

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 79 5.5e-12 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 2 - 76 1e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 54
AgsI TTSAA 1 cut(s) 42
AluBI AGCT 1 cut(s) 237
AluI AGCT 1 cut(s) 237
Alw21I GWGCWC 1 cut(s) 219
Alw44I GTGCAC 1 cut(s) 215
ApaLI GTGCAC 1 cut(s) 215
ApeKI GCWGC 2 cut(s) 4, 64
BaeGI GKGCMC 1 cut(s) 219
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 2 cut(s) 16, 51
BccI CCATC 1 cut(s) 198
BfaI CTAG 5 cut(s) 68, 92, 203, 234, 238
BfmI CTRYAG 1 cut(s) 109
BisI GCNGC 2 cut(s) 5, 65
BlsI GCNGC 2 cut(s) 6, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 54
BseSI GKGCMC 1 cut(s) 219
BseXI GCAGC 2 cut(s) 16, 51
BsgI GTGCAG 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 219
BspMAI CTGCAG 1 cut(s) 113
Bst4CI ACNGT 3 cut(s) 128, 197, 221
BstSFI CTRYAG 1 cut(s) 109
BstSLI GKGCMC 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 16, 51
BtsIMutI CAGTG 2 cut(s) 193, 217
CviJI RGCY 5 cut(s) 59, 90, 103, 232, 237
CviKI_1 RGCY 5 cut(s) 59, 90, 103, 232, 237
DraI TTTAAA 1 cut(s) 228
FaiI YATR 8 cut(s) 9, 29, 35, 37, 53, 75, 77, 106
Fnu4HI GCNGC 2 cut(s) 5, 65
Fsp4HI GCNGC 2 cut(s) 5, 65
FspBI CTAG 5 cut(s) 68, 92, 203, 234, 238
GluI GCNGC 2 cut(s) 5, 65
HincII GTYRAC 1 cut(s) 200
HindII GTYRAC 1 cut(s) 200
Hpy166II GTNNAC 3 cut(s) 151, 200, 217
Hpy8I GTNNAC 3 cut(s) 151, 200, 217
HpyCH4III ACNGT 3 cut(s) 128, 197, 221
HpyCH4V TGCA 4 cut(s) 4, 111, 118, 217
Lsp1109I GCAGC 2 cut(s) 16, 51
MaeI CTAG 5 cut(s) 68, 92, 203, 234, 238
MboII GAAGA 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 219
MseI TTAA 1 cut(s) 227
PkrI GCNGC 2 cut(s) 6, 66
PstI CTGCAG 1 cut(s) 113
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 2 cut(s) 5, 65
SduI GDGCHC 1 cut(s) 219
SetI ASST 2 cut(s) 27, 239
SfcI CTRYAG 1 cut(s) 109
SgeI CNNG 6 cut(s) 29, 34, 59, 80, 104, 215
SspMI CTAG 5 cut(s) 68, 92, 203, 234, 238
TaaI ACNGT 3 cut(s) 128, 197, 221
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TscAI CASTG 2 cut(s) 200, 224
TseI GCWGC 2 cut(s) 4, 64
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 2 cut(s) 200, 224
VneI GTGCAC 1 cut(s) 215
XspI CTAG 5 cut(s) 68, 92, 203, 234, 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.