RchiOBHm_Chr4g0405831

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
26578468 .. 26578650
183 bp
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UTR
Exon/CDS
Intron
PRQ37729

Sequence Viewer

Length: 183 bp
ATGAACGAGGTCGCAGTCATTAGTAGAACTTTCCATGTCAACGTTGTCAGCTTGTTGGGATTTTGCTTTGAGGGTTCAAAACGAGCTCTTATCTATGAATTCATGCCTAATGGATCTCTTGAGAAGTTCATATTTGATGCAAATAACCCCCAAAAAATCATCATTTCGGATGGGAAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

60

Amino Acids

6.77

Weight (kDa)

6.71

Isoelectric Point (pI)

26.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 49 1.3e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 42
AclWI GGATC 1 cut(s) 121
AcsI RAATTY 1 cut(s) 98
AgsI TTSAA 1 cut(s) 78
AluBI AGCT 2 cut(s) 51, 86
AluI AGCT 2 cut(s) 51, 86
Alw21I GWGCWC 1 cut(s) 88
AlwI GGATC 1 cut(s) 121
ApoI RAATTY 1 cut(s) 98
BanII GRGCYC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 88
BccI CCATC 1 cut(s) 164
BmsI GCATC 1 cut(s) 127
BpuEI CTTGAG 1 cut(s) 140
BseGI GGATG 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 1 cut(s) 113
BspPI GGATC 1 cut(s) 121
BssMI GATC 1 cut(s) 113
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 1 cut(s) 116
BstMBI GATC 1 cut(s) 113
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BtsCI GGATG 1 cut(s) 175
CviAII CATG 2 cut(s) 35, 103
CviJI RGCY 2 cut(s) 51, 86
CviKI_1 RGCY 2 cut(s) 51, 86
DpnI GATC 1 cut(s) 115
DpnII GATC 1 cut(s) 113
Ecl136II GAGCTC 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 88
Eco53kI GAGCTC 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 88
FaeI CATG 2 cut(s) 38, 106
FaiI YATR 4 cut(s) 36, 96, 104, 131
FatI CATG 2 cut(s) 34, 102
FriOI GRGCYC 1 cut(s) 88
Hin1II CATG 2 cut(s) 38, 106
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 2 cut(s) 38, 106
Kzo9I GATC 1 cut(s) 113
LweI GCATC 1 cut(s) 127
MaeII ACGT 1 cut(s) 42
MalI GATC 1 cut(s) 115
MboI GATC 1 cut(s) 113
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 1 cut(s) 98
MnlI CCTC 1 cut(s) 64
NdeII GATC 1 cut(s) 113
NlaIII CATG 2 cut(s) 38, 106
Psp124BI GAGCTC 1 cut(s) 88
Psp1406I AACGTT 1 cut(s) 42
PsuI RGATCY 1 cut(s) 113
SacI GAGCTC 1 cut(s) 88
Sau3AI GATC 1 cut(s) 113
SduI GDGCHC 1 cut(s) 88
SetI ASST 4 cut(s) 12, 45, 53, 88
SfaNI GCATC 1 cut(s) 127
SgeI CNNG 6 cut(s) 19, 47, 64, 95, 115, 131
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 1 cut(s) 98
SstI GAGCTC 1 cut(s) 88
TaiI ACGT 1 cut(s) 45
TasI AATT 1 cut(s) 98
TspDTI ATGAA 4 cut(s) 17, 91, 111, 118
XapI RAATTY 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.