RchiOBHm_Chr4g0409871

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
33488533 .. 33488778
246 bp
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UTR
Exon/CDS
Intron
PRQ38084

Sequence Viewer

Length: 246 bp
ATGTATGAGGAAATCGTAATGGCAACAAAAGATTTTGATTTTATGTATTGCATAGGGAAGGGAGAACATGGAACTGTCTACAAAGCAACTCTGTCAAATGTTAACACAGTAGATGTGAAGAAACTCCATCTGTTATGCGCTGATGAGAAGAATCTTCAAAAGGAATTCTTGAATGAAATCAGGGCACTAACTAAGATGCAACACCAAAATATTGTGAAGTTTTATGGTTTATGTTCACATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

81

Amino Acids

9.44

Weight (kDa)

7.74

Isoelectric Point (pI)

25.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 15 - 80 6.1e-11 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 17 - 79 1.5e-09 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 78
AcsI RAATTY 1 cut(s) 164
AgsI TTSAA 2 cut(s) 158, 172
AleI CACNNNNGTG 1 cut(s) 241
ApoI RAATTY 1 cut(s) 164
AspLEI GCGC 1 cut(s) 140
BaeGI GKGCMC 1 cut(s) 187
BccI CCATC 1 cut(s) 135
BmsI GCATC 1 cut(s) 186
BseSI GKGCMC 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 187
Bst4CI ACNGT 2 cut(s) 76, 109
BstDEI CTNAG 1 cut(s) 192
BstHHI GCGC 1 cut(s) 140
BstSLI GKGCMC 1 cut(s) 187
CfoI GCGC 1 cut(s) 140
CviAII CATG 1 cut(s) 68
DdeI CTNAG 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 164
FaeI CATG 1 cut(s) 71
FaiI YATR 8 cut(s) 6, 44, 53, 69, 136, 225, 232, 240
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 1 cut(s) 67
FblI GTMKAC 1 cut(s) 78
GlaI GCGC 1 cut(s) 139
HhaI GCGC 1 cut(s) 140
Hin1II CATG 1 cut(s) 71
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 1 cut(s) 151
HpaI GTTAAC 1 cut(s) 103
Hpy166II GTNNAC 3 cut(s) 79, 103, 236
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 3 cut(s) 79, 103, 236
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 2 cut(s) 76, 109
HpyCH4V TGCA 2 cut(s) 51, 199
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 1 cut(s) 71
HspAI GCGC 1 cut(s) 138
KspAI GTTAAC 1 cut(s) 103
LpnPI CCDG 1 cut(s) 166
LweI GCATC 1 cut(s) 186
MboII GAAGA 3 cut(s) 130, 146, 160
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 1 cut(s) 164
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 1 cut(s) 241
NlaIII CATG 1 cut(s) 71
OliI CACNNNNGTG 1 cut(s) 241
PfeI GAWTC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 241
SaqAI TTAA 1 cut(s) 102
SduI GDGCHC 1 cut(s) 187
SetI ASST 1 cut(s) 245
SfaNI GCATC 1 cut(s) 186
SgeI CNNG 3 cut(s) 80, 181, 193
SmiMI CAYNNNNRTG 1 cut(s) 241
Sse9I AATT 1 cut(s) 164
SspI AATATT 1 cut(s) 211
TaaI ACNGT 2 cut(s) 76, 109
TasI AATT 1 cut(s) 164
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 189
XapI RAATTY 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.