RchiOBHm_Chr4g0411791

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
35633444 .. 35634855
1412 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38255

Sequence Viewer

Length: 399 bp
ATGGTGATCATTGAAGAAGCCTCTCATCCATGGACATACCATGTCTTTCTGAGTTTTCGAGGTGAGGATACACGCAACAATTTCACAGGCCATCTATGCAGCGCATTACTTCGGGAGGGAATCGACACCTTCATGGATGATCAGCTCAAACGAGGAGAAGAAATATCATTGTGTTCTCTGAAAACTATGCATCCTCCAAGTGGTGCTTGGATGAACTTGTCAAGATTCTCGAGTGCAGGAAATCAATTCAACAAATGGTTCGACCAGTTTTCTACAAAGTCGATCCCTCGGATATACGAAATCACGAAGGTAGCTTTGGGAAGGCACTTGCTAATCATGAATGCAAATTCAAAGATAACCCGGACAAGGTCCAGGAATGGAAGGCAGCTCTTACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

132

Amino Acids

15.25

Weight (kDa)

9.62

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 13 - 56 6.5e-10 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 277
AcsI RAATTY 1 cut(s) 346
AfiI CCNNNNNNNGG 2 cut(s) 200, 366
AgsI TTSAA 3 cut(s) 14, 250, 351
AjnI CCWGG 1 cut(s) 371
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 3 cut(s) 145, 314, 388
AluI AGCT 3 cut(s) 145, 314, 388
AlwI GGATC 1 cut(s) 277
Ama87I CYCGRG 1 cut(s) 229
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 2 cut(s) 99, 385
ApoI RAATTY 1 cut(s) 346
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 369
AsuC2I CCSGG 1 cut(s) 361
AsuHPI GGTGA 2 cut(s) 16, 74
AvaI CYCGRG 1 cut(s) 229
AvaII GGWCC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 111
BccI CCATC 1 cut(s) 99
BciT130I CCWGG 1 cut(s) 373
BciVI GTATCC 1 cut(s) 61
BclI TGATCA 2 cut(s) 6, 139
BcnI CCSGG 1 cut(s) 361
BfuI GTATCC 1 cut(s) 61
BisI GCNGC 2 cut(s) 100, 386
BlsI GCNGC 2 cut(s) 101, 387
Bme1390I CCNGG 2 cut(s) 361, 373
Bme18I GGWCC 1 cut(s) 369
BmeT110I CYCGRG 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 369
BmrFI CCNGG 2 cut(s) 361, 373
BmsI GCATC 1 cut(s) 199
BpuMI CCSGG 1 cut(s) 361
BsaJI CCNNGG 2 cut(s) 29, 287
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 366
Bse1I ACTGG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 373
BseDI CCNNGG 2 cut(s) 29, 287
BseGI GGATG 4 cut(s) 25, 142, 190, 216
BseLI CCNNNNNNNGG 2 cut(s) 200, 366
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 111
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 229
BsiSI CCGG 1 cut(s) 361
BslI CCNNNNNNNGG 2 cut(s) 200, 366
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 229
Bsp143I GATC 3 cut(s) 6, 139, 282
Bsp19I CCATGG 1 cut(s) 29
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 42
BspHI TCATGA 1 cut(s) 336
BspPI GGATC 1 cut(s) 277
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 2 cut(s) 29, 287
BssMI GATC 3 cut(s) 6, 139, 282
BssT1I CCWWGG 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 1 cut(s) 396
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 29
BstF5I GGATG 4 cut(s) 25, 142, 190, 216
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 3 cut(s) 9, 142, 285
BstMBI GATC 3 cut(s) 6, 139, 282
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNI CCWGG 1 cut(s) 373
BstSCI CCNGG 2 cut(s) 359, 371
BstV1I GCAGC 1 cut(s) 111
BsuI GTATCC 1 cut(s) 61
BsuRI GGCC 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 29
BtsCI GGATG 4 cut(s) 25, 142, 190, 216
CciI TCATGA 1 cut(s) 336
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 369
CviAII CATG 4 cut(s) 30, 41, 133, 337
CviJI RGCY 5 cut(s) 20, 90, 145, 314, 388
CviKI_1 RGCY 5 cut(s) 20, 90, 145, 314, 388
DdeI CTNAG 1 cut(s) 50
DpnI GATC 3 cut(s) 8, 141, 284
DpnII GATC 3 cut(s) 6, 139, 282
Eco130I CCWWGG 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 29
EcoT22I ATGCAT 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 4 cut(s) 33, 44, 136, 340
FaiI YATR 8 cut(s) 31, 37, 42, 97, 134, 188, 295, 338
FalI AAGNNNNNCTT 2 cut(s) 190, 222
FatI CATG 4 cut(s) 29, 40, 132, 336
FbaI TGATCA 2 cut(s) 6, 139
Fnu4HI GCNGC 2 cut(s) 100, 386
FokI GGATG 4 cut(s) 12, 149, 177, 223
Fsp4HI GCNGC 2 cut(s) 100, 386
GlaI GCGC 1 cut(s) 103
GluI GCNGC 2 cut(s) 100, 386
HaeIII GGCC 1 cut(s) 90
HapII CCGG 1 cut(s) 361
HhaI GCGC 1 cut(s) 104
Hin1II CATG 4 cut(s) 33, 44, 136, 340
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 2 cut(s) 120, 225
HpaII CCGG 1 cut(s) 361
HphI GGTGA 2 cut(s) 16, 74
Hpy188I TCNGA 3 cut(s) 51, 180, 291
Hpy188III TCNNGA 5 cut(s) 113, 222, 229, 304, 337
HpyAV CCTTC 4 cut(s) 139, 301, 315, 375
HpyCH4III ACNGT 1 cut(s) 396
HpyCH4V TGCA 4 cut(s) 99, 190, 236, 344
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 4 cut(s) 33, 44, 136, 340
HspAI GCGC 1 cut(s) 102
Ksp22I TGATCA 2 cut(s) 6, 139
Kzo9I GATC 3 cut(s) 6, 139, 282
LpnPI CCDG 6 cut(s) 72, 222, 278, 358, 374, 385
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 1 cut(s) 199
MalI GATC 3 cut(s) 8, 141, 284
MboI GATC 3 cut(s) 6, 139, 282
MboII GAAGA 2 cut(s) 26, 170
MluCI AATT 3 cut(s) 79, 245, 346
MnlI CCTC 7 cut(s) 31, 53, 58, 109, 146, 204, 297
Mph1103I ATGCAT 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 1 cut(s) 361
MspR9I CCNGG 2 cut(s) 361, 373
Mva1269I GAATGC 1 cut(s) 346
MvaI CCWGG 1 cut(s) 373
MwoI GCNNNNNNNGC 1 cut(s) 96
NciI CCSGG 1 cut(s) 361
NcoI CCATGG 1 cut(s) 29
NdeII GATC 3 cut(s) 6, 139, 282
NlaIII CATG 4 cut(s) 33, 44, 136, 340
NsiI ATGCAT 1 cut(s) 192
PaeR7I CTCGAG 1 cut(s) 229
PagI TCATGA 1 cut(s) 336
PctI GAATGC 1 cut(s) 346
PfeI GAWTC 2 cut(s) 120, 225
PflFI GACNNNGTC 1 cut(s) 367
PfoI TCCNGGA 1 cut(s) 371
PkrI GCNGC 2 cut(s) 101, 387
Psp6I CCWGG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 371
PspPI GGNCC 1 cut(s) 369
PsyI GACNNNGTC 1 cut(s) 367
RseI CAYNNNNRTG 1 cut(s) 131
SatI GCNGC 2 cut(s) 100, 386
Sau3AI GATC 3 cut(s) 6, 139, 282
Sau96I GGNCC 1 cut(s) 369
ScrFI CCNGG 2 cut(s) 361, 373
SetI ASST 7 cut(s) 64, 131, 147, 312, 316, 371, 390
SfaNI GCATC 1 cut(s) 199
Sfr274I CTCGAG 1 cut(s) 229
SinI GGWCC 1 cut(s) 369
SlaI CTCGAG 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
Sse9I AATT 3 cut(s) 79, 245, 346
StyD4I CCNGG 2 cut(s) 359, 371
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 396
TaqI TCGA 5 cut(s) 58, 123, 230, 261, 281
TasI AATT 3 cut(s) 79, 245, 346
TfiI GAWTC 2 cut(s) 120, 225
TseI GCWGC 2 cut(s) 99, 385
TspDTI ATGAA 3 cut(s) 121, 227, 353
Tth111I GACNNNGTC 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 369
XapI RAATTY 1 cut(s) 346
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
XhoI CTCGAG 1 cut(s) 229
Zsp2I ATGCAT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.