Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

44799530 .. 44802253

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38928

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGTGAAGTTTATGTTGGAGCATCTGGAGAAATCGGTGTGGGATATTAGACGGGTCTTGCTGGGCCGTTCATTGCGAGAAGAAGATTGTCGGAGTATACACCCGCCACGGATGGGGTGTGTTCTGTGGCGGTTCATAATAGCAAGAAATTTCGGGGATTTGAACAAAATGGCTAATTTCTTTGCTGTATTGTGTTCGACGGAATTTTGTATCGTTTCACTGCCATTGTTCTTCTGTCTGTTGATTAACATTATCTTCATCTCTTATTGTTATTCAGGTGCTTTTCTTTTTCGTATTCAGATCAAGTTTGCACTGGGAACAGTGTGCTATCAGCTTCTGTTACTTTGGATTCAGCCTGTTGCTCAAAACATAAGGGTAGATCATCATCCTGGTGGTGGGCATTGGTTTGCTGCGGGTCTCTCTCCTAATTACTCGAGAAAGTTAGATGAAGCTCTTGAGGTTGCTGCTCATAATTTTGCTCTTGTGTTCATAATCTACAATGCTGGAACTGATATTCTAGATGGCGATCCTTTGGGCAGTGCATTTTTGAGTCTTTGTCACGCCAACAATGGCTACCCTTCAAATTTTGGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0030587 GO:0031152 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0035556 GO:0036211 GO:0040011 GO:0042221 GO:0042330 GO:0042493 GO:0042594 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045472 GO:0046677 GO:0048518 GO:0048519 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051409 GO:0051703 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0071704 GO:0090702 GO:0097327 GO:0098630 GO:0098743 GO:0099120 GO:0140096 GO:1901564 GO:1901654 GO:1901700 GO:1904643

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

198

Amino Acids

22.44

Weight (kDa)

7.61

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	97
AciI	CCGC	3 cut(s)	104, 130, 413
AclWI	GGATC	1 cut(s)	521
AcsI	RAATTY	3 cut(s)	148, 203, 583
AfiI	CCNNNNNNNGG	2 cut(s)	113, 395
AgsI	TTSAA	2 cut(s)	163, 582
AjnI	CCWGG	1 cut(s)	388
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	2 cut(s)	334, 452
AluI	AGCT	2 cut(s)	334, 452
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	1 cut(s)	521
AlwNI	CAGNNNCTG	1 cut(s)	337
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	2 cut(s)	410, 464
ApoI	RAATTY	3 cut(s)	148, 203, 583
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	433
BbvI	GCAGC	2 cut(s)	397, 451
BccI	CCATC	2 cut(s)	106, 515
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	1 cut(s)	518
BisI	GCNGC	2 cut(s)	411, 465
BlsI	GCNGC	2 cut(s)	412, 466
Bme1390I	CCNGG	1 cut(s)	390
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	390
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	31
BmuI	ACTGGG	1 cut(s)	323
BpmI	CTGGAG	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	476
BsaBI	GATNNNNATC	2 cut(s)	384, 525
BsaI	GGTCTC	1 cut(s)	422
BsaJI	CCNNGG	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 395
Bse1I	ACTGG	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	71
Bse8I	GATNNNNATC	2 cut(s)	384, 525
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	2 cut(s)	117, 385
BseJI	GATNNNNATC	2 cut(s)	384, 525
BseLI	CCNNNNNNNGG	2 cut(s)	113, 395
BseMI	GCAATG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	318
BseXI	GCAGC	2 cut(s)	397, 451
BseYI	CCCAGC	1 cut(s)	61
BshFI	GGCC	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	433
BslI	CCNNNNNNNGG	2 cut(s)	113, 395
BsmAI	GTCTC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	66
Bso31I	GGTCTC	1 cut(s)	422
BsoBI	CYCGRG	1 cut(s)	433
Bsp143I	GATC	3 cut(s)	300, 379, 526
BspACI	CCGC	3 cut(s)	104, 130, 413
BspANI	GGCC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	422
BsrDI	GCAATG	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	3 cut(s)	300, 379, 526
BssNAI	GTATAC	1 cut(s)	98
Bst1107I	GTATAC	1 cut(s)	98
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	322
BstDSI	CCRYGG	1 cut(s)	107
BstF5I	GGATG	2 cut(s)	117, 385
BstKTI	GATC	3 cut(s)	303, 382, 529
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	3 cut(s)	300, 379, 526
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	388
BstV1I	GCAGC	2 cut(s)	397, 451
BstZ17I	GTATAC	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	117, 385
BtsI	GCAGTG	2 cut(s)	218, 544
BtsIMutI	CAGTG	4 cut(s)	218, 311, 327, 544
CaiI	CAGNNNCTG	1 cut(s)	337
Cfr13I	GGNCC	1 cut(s)	64
CviJI	RGCY	6 cut(s)	66, 173, 334, 355, 452, 573
CviKI_1	RGCY	6 cut(s)	66, 173, 334, 355, 452, 573
DpnI	GATC	3 cut(s)	302, 381, 528
DpnII	GATC	3 cut(s)	300, 379, 526
Eco31I	GGTCTC	1 cut(s)	422
Eco88I	CYCGRG	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	388
FaiI	YATR	6 cut(s)	14, 98, 137, 371, 471, 491
FauI	CCCGC	2 cut(s)	111, 406
FblI	GTMKAC	1 cut(s)	97
Fnu4HI	GCNGC	2 cut(s)	411, 465
FokI	GGATG	2 cut(s)	124, 372
Fsp4HI	GCNGC	2 cut(s)	411, 465
FspBI	CTAG	1 cut(s)	518
GluI	GCNGC	2 cut(s)	411, 465
GsaI	CCCAGC	1 cut(s)	65
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	66
HinfI	GANTC	2 cut(s)	349, 550
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	2 cut(s)	93, 300
Hpy188III	TCNNGA	4 cut(s)	26, 435, 455, 518
Hpy8I	GTNNAC	1 cut(s)	98
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	588
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4V	TGCA	2 cut(s)	311, 542
Kzo9I	GATC	3 cut(s)	300, 379, 526
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	8 cut(s)	11, 47, 261, 299, 369, 375, 402, 489
Lsp1109I	GCAGC	2 cut(s)	397, 451
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	518
MaeIII	GTNAC	2 cut(s)	339, 557
MalI	GATC	3 cut(s)	302, 381, 528
MboI	GATC	3 cut(s)	300, 379, 526
MboII	GAAGA	4 cut(s)	92, 95, 223, 247
MluCI	AATT	6 cut(s)	148, 175, 203, 427, 472, 583
MlyI	GAGTC	1 cut(s)	559
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	1 cut(s)	451
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	390
MspR9I	CCNGG	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	390
NdeII	GATC	3 cut(s)	300, 379, 526
NmuCI	GTSAC	1 cut(s)	557
PaeR7I	CTCGAG	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	412, 466
PleI	GAGTC	1 cut(s)	558
PpsI	GAGTC	1 cut(s)	558
Psp6I	CCWGG	1 cut(s)	388
PspFI	CCCAGC	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	388
PspPI	GGNCC	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	2 cut(s)	411, 465
Sau3AI	GATC	3 cut(s)	300, 379, 526
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	1 cut(s)	390
SetI	ASST	4 cut(s)	280, 336, 454, 462
SfaNI	GCATC	1 cut(s)	31
Sfr274I	CTCGAG	1 cut(s)	433
SlaI	CTCGAG	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	2 cut(s)	433, 455
SmoI	CTYRAG	2 cut(s)	433, 455
Sse9I	AATT	6 cut(s)	148, 175, 203, 427, 472, 583
SsiI	CCGC	3 cut(s)	104, 130, 413
SspMI	CTAG	1 cut(s)	518
StyD4I	CCNGG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	322
TaqI	TCGA	2 cut(s)	197, 434
TasI	AATT	6 cut(s)	148, 175, 203, 427, 472, 583
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	4 cut(s)	225, 318, 327, 544
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	2 cut(s)	410, 464
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	5 cut(s)	60, 124, 247, 462, 478
TspGWI	ACGGA	2 cut(s)	124, 215
TspRI	CASTG	4 cut(s)	225, 318, 327, 544
XapI	RAATTY	3 cut(s)	148, 203, 583
XbaI	TCTAGA	1 cut(s)	517
XhoI	CTCGAG	1 cut(s)	433
XmiI	GTMKAC	1 cut(s)	97
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.