Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

55688831 .. 55689110

Gene Structure 280 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40009

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGAGACATTGGGCTTGCTCGAGTATCTTCAATGATGCCCCATATGCTATTTTTTGGACTGATTATGTTGCAACTCGATGGTACCGAGCCTCTGAACTTTGTGGCTCATTTTTGTCAAATGTAAGTTTCATTTCACTATTGAGACCTCTTATATATATATATATATATATATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

58

Amino Acids

6.95

Weight (kDa)

7.79

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	81
AccB1I	GGYRCC	1 cut(s)	81
AfaI	GTAC	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	31
Alw26I	GTCTC	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	19
Asp718I	GGTACC	1 cut(s)	81
AvaI	CYCGRG	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	81
BccI	CCATC	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	19
BmiI	GGNNCC	1 cut(s)	83
BmsI	GCATC	1 cut(s)	25
BsaI	GGTCTC	1 cut(s)	136
BshNI	GGYRCC	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	136
Bso31I	GGTCTC	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	82
CviJI	RGCY	3 cut(s)	14, 89, 105
CviKI_1	RGCY	3 cut(s)	14, 89, 105
CviQI	GTAC	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	19
FauNDI	CATATG	1 cut(s)	43
FspEI	CC	9 cut(s)	40, 52, 53, 54, 64, 87, 98, 103, 159
Hpy188I	TCNGA	1 cut(s)	94
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
KpnI	GGTACC	1 cut(s)	85
LweI	GCATC	1 cut(s)	25
MboII	GAAGA	1 cut(s)	19
MnlI	CCTC	2 cut(s)	100, 156
MwoI	GCNNNNNNNGC	1 cut(s)	44
NdeI	CATATG	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	83
PaeR7I	CTCGAG	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	83
PspXI	VCTCGAGB	1 cut(s)	19
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SetI	ASST	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	25
Sfr274I	CTCGAG	1 cut(s)	19
SgeI	CNNG	5 cut(s)	27, 31, 33, 87, 98
SlaI	CTCGAG	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
TaqI	TCGA	2 cut(s)	20, 76
TspDTI	ATGAA	1 cut(s)	118
XhoI	CTCGAG	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.