Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

60048690 .. 60050712

Gene Structure 2023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40516

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGATCCATCAAAGGTTGTTAGATGTTGTTTGGAGCATGCTGCATCAGTCGCAAAAACTTTTCTGTTGTCTGATGCTGTTGTCGTCGAGATTAAGGAATTGAATCCCATCCCAAGAAGAATGCCAAGGCGAAGGCCAAAGCCACCCCTTCCCCCCATGCCCCAAATGCCACAGATGCCGCCAATGCCACCAATGTCCATGCCAACCTCAGGTGCTCGATCATTTGGTTCCAAGTATGGCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006458 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051082 GO:0061077

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

81

Amino Acids

9.03

Weight (kDa)

10.58

Isoelectric Point (pI)

90.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	179
AclWI	GGATC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	103
Alw21I	GWGCWC	1 cut(s)	217
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	41
AxyI	CCTNAGG	1 cut(s)	208
BamHI	GGATCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	2 cut(s)	16, 116
BisI	GCNGC	2 cut(s)	42, 179
BlsI	GCNGC	2 cut(s)	43, 180
BmiI	GGNNCC	2 cut(s)	6, 229
BmsI	GCATC	3 cut(s)	53, 64, 165
BsaJI	CCNNGG	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse21I	CCTNAGG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	125
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	28
BshFI	GGCC	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	217
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmI	GAATGC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	4, 218
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	1 cut(s)	221
BspLI	GGNNCC	2 cut(s)	6, 229
BspPI	GGATC	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	125
BssMI	GATC	2 cut(s)	4, 218
BssT1I	CCWWGG	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	108
BstKTI	GATC	2 cut(s)	7, 221
BstMBI	GATC	2 cut(s)	4, 218
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 166, 175, 184
BstNSI	RCATGY	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	28
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	39
CviAII	CATG	3 cut(s)	38, 157, 199
CviJI	RGCY	2 cut(s)	136, 142
CviKI_1	RGCY	2 cut(s)	136, 142
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	2 cut(s)	6, 220
DpnII	GATC	2 cut(s)	4, 218
Eco130I	CCWWGG	1 cut(s)	125
Eco81I	CCTNAGG	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	3 cut(s)	41, 160, 202
FaiI	YATR	4 cut(s)	39, 158, 200, 237
FatI	CATG	3 cut(s)	37, 156, 198
Fnu4HI	GCNGC	2 cut(s)	42, 179
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	42, 179
GluI	GCNGC	2 cut(s)	42, 179
HaeIII	GGCC	1 cut(s)	136
Hin1II	CATG	3 cut(s)	41, 160, 202
HinfI	GANTC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	126, 158
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 166, 175, 184
HpyF3I	CTNAG	1 cut(s)	208
Hsp92II	CATG	3 cut(s)	41, 160, 202
Kzo9I	GATC	2 cut(s)	4, 218
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	1 cut(s)	195
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	3 cut(s)	53, 64, 165
MalI	GATC	2 cut(s)	6, 220
MboI	GATC	2 cut(s)	4, 218
MboII	GAAGA	1 cut(s)	129
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	1 cut(s)	98
MnlI	CCTC	1 cut(s)	217
MseI	TTAA	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	126
MwoI	GCNNNNNNNGC	4 cut(s)	50, 166, 175, 184
NdeII	GATC	2 cut(s)	4, 218
NlaIII	CATG	3 cut(s)	41, 160, 202
NlaIV	GGNNCC	2 cut(s)	6, 229
NspI	RCATGY	1 cut(s)	41
PaeI	GCATGC	1 cut(s)	41
PctI	GAATGC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	43, 180
PspN4I	GGNNCC	2 cut(s)	6, 229
PsuI	RGATCY	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	2 cut(s)	42, 179
Sau3AI	GATC	2 cut(s)	4, 218
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	3 cut(s)	18, 209, 214
SfaNI	GCATC	3 cut(s)	53, 64, 165
SgeI	CNNG	8 cut(s)	50, 100, 126, 138, 169, 211, 222, 228
SphI	GCATGC	1 cut(s)	41
Sse9I	AATT	1 cut(s)	98
SsiI	CCGC	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	125
TaqI	TCGA	2 cut(s)	87, 217
TasI	AATT	1 cut(s)	98
TauI	GCSGC	1 cut(s)	181
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TseI	GCWGC	1 cut(s)	41
XceI	RCATGY	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.