RchiOBHm_Chr5g0001211

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
627100 .. 631258
4159 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28266

Sequence Viewer

Length: 525 bp
ATGTGCTCGAAACTTCGAATGAATAAAAAGAAGTATTTACTTGGGGCTCATTTGCAGTGGCAGAACCAGGATACAAAAGTGGGGGATCTTTCAAACAATCAACTGACTGGGACTATACCAGAGAGCTTAGGGAATTTGACTTTCGCCAGTGGCATTTATCTGAGTGGCAACTTTCTCAAGGGTTCTATACCAGCATCTTTGGGTAAACTGACTTATCTCAGGTTGCTGGTAATTAGTGATGTAGGAGACTCTCATTTCCAGTTCCTACCGTCTAATATGACGAGAAGCTTATTTACTTTGATGCTAAGAAACTGCTCAATCTCCGGTCAAATTCCTTCTGACATGGGAAATATGTCATCGTTATCGAACCTGTCCTTTTCAAACAATATGCTTTCTGGGAAAATTCCTGATTGGGTTCAAAATGCAACCTGGAGTAAGATGTATGTTTCAATATATTGTACATCCTATCTATTGTGTATTGAGATGCCGATAACATTTATAACTCTGCTGACATTCTCTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

174

Amino Acids

19.33

Weight (kDa)

9.12

Isoelectric Point (pI)

30.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 500
AclWI GGATC 1 cut(s) 93
AcsI RAATTY 3 cut(s) 133, 330, 402
AfaI GTAC 1 cut(s) 460
AgsI TTSAA 4 cut(s) 93, 381, 419, 450
AjnI CCWGG 2 cut(s) 66, 428
AluBI AGCT 2 cut(s) 126, 288
AluI AGCT 2 cut(s) 126, 288
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 1 cut(s) 93
ApoI RAATTY 3 cut(s) 133, 330, 402
AsuII TTCGAA 1 cut(s) 16
BaeI ACNNNNGTAYC 2 cut(s) 63, 96
BanII GRGCYC 1 cut(s) 49
BarI GAAGNNNNNNTAC 2 cut(s) 277, 309
Bbv12I GWGCWC 1 cut(s) 8
BciT130I CCWGG 2 cut(s) 68, 430
BciVI GTATCC 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 1 cut(s) 519
BfuI GTATCC 1 cut(s) 64
Bme1390I CCNGG 2 cut(s) 68, 430
BmrFI CCNGG 2 cut(s) 68, 430
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 3 cut(s) 203, 291, 474
BmuI ACTGGG 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 451
Bpu10I CCTNAGC 1 cut(s) 127
Bpu14I TTCGAA 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 161
BsaWI WCCGGW 1 cut(s) 323
Bse1I ACTGG 3 cut(s) 112, 147, 259
BseBI CCWGG 2 cut(s) 68, 430
BseGI GGATG 1 cut(s) 461
BseMII CTCAG 2 cut(s) 152, 232
BseNI ACTGG 3 cut(s) 112, 147, 259
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 324
BslFI GGGAC 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 124
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 2 cut(s) 8, 49
Bsp1407I TGTACA 1 cut(s) 458
Bsp143I GATC 1 cut(s) 85
BspCNI CTCAG 2 cut(s) 153, 231
BspPI GGATC 1 cut(s) 93
BspT104I TTCGAA 1 cut(s) 16
BsrGI TGTACA 1 cut(s) 458
BsrI ACTGG 3 cut(s) 112, 147, 259
BssMI GATC 1 cut(s) 85
Bst2UI CCWGG 2 cut(s) 68, 430
Bst4CI ACNGT 1 cut(s) 270
BstAUI TGTACA 1 cut(s) 458
BstBI TTCGAA 1 cut(s) 16
BstDEI CTNAG 4 cut(s) 127, 161, 218, 305
BstF5I GGATG 1 cut(s) 461
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 1 cut(s) 85
BstNI CCWGG 2 cut(s) 68, 430
BstSCI CCNGG 2 cut(s) 66, 428
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuI GTATCC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 461
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 2 cut(s) 62, 154
Csp6I GTAC 1 cut(s) 459
CviAII CATG 1 cut(s) 343
CviJI RGCY 3 cut(s) 47, 126, 288
CviKI_1 RGCY 3 cut(s) 47, 126, 288
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 4 cut(s) 127, 161, 218, 305
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 49
EcoRII CCWGG 2 cut(s) 66, 428
EcoT38I GRGCYC 1 cut(s) 49
FaeI CATG 1 cut(s) 346
FaiI YATR 9 cut(s) 116, 188, 278, 344, 353, 389, 444, 454, 500
FaqI GGGAC 1 cut(s) 124
FatI CATG 1 cut(s) 342
FokI GGATG 1 cut(s) 448
FriOI GRGCYC 1 cut(s) 49
FspBI CTAG 1 cut(s) 519
GsuI CTGGAG 1 cut(s) 451
HapII CCGG 1 cut(s) 324
Hin1II CATG 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 1 cut(s) 248
HpaII CCGG 1 cut(s) 324
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 2 cut(s) 162, 340
Hpy188III TCNNGA 1 cut(s) 407
Hpy8I GTNNAC 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 345
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4V TGCA 2 cut(s) 55, 425
HpyF3I CTNAG 4 cut(s) 127, 161, 218, 305
Hsp92II CATG 1 cut(s) 346
Kzo9I GATC 1 cut(s) 85
LweI GCATC 3 cut(s) 203, 291, 474
MaeI CTAG 1 cut(s) 519
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 2 cut(s) 8, 49
MluCI AATT 4 cut(s) 133, 231, 330, 402
MlyI GAGTC 1 cut(s) 242
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 2 cut(s) 68, 430
MvaI CCWGG 2 cut(s) 68, 430
NdeII GATC 1 cut(s) 85
NlaIII CATG 1 cut(s) 346
NspV TTCGAA 1 cut(s) 16
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PsiI TTATAA 1 cut(s) 500
Psp6I CCWGG 2 cut(s) 66, 428
PspGI CCWGG 2 cut(s) 66, 428
PsuI RGATCY 1 cut(s) 85
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
Sau3AI GATC 1 cut(s) 85
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 2 cut(s) 68, 430
SduI GDGCHC 2 cut(s) 8, 49
SetI ASST 5 cut(s) 128, 224, 290, 372, 431
SfaNI GCATC 3 cut(s) 203, 291, 474
SfuI TTCGAA 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 4 cut(s) 133, 231, 330, 402
SspMI CTAG 1 cut(s) 519
StyD4I CCNGG 2 cut(s) 66, 428
TaaI ACNGT 1 cut(s) 270
TaqI TCGA 3 cut(s) 8, 16, 365
TasI AATT 4 cut(s) 133, 231, 330, 402
TatI WGTACW 1 cut(s) 458
TscAI CASTG 2 cut(s) 62, 154
TspDTI ATGAA 1 cut(s) 35
TspRI CASTG 2 cut(s) 62, 154
XapI RAATTY 3 cut(s) 133, 330, 402
XspI CTAG 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.