Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3283390 .. 3285399

Gene Structure 2010 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28621

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGTGTAGGAACGGTGAGGGGTTTGTAAGGATGGACAATGTGAATGTTCCAGATACTTCCACAGTCGAATTGGACAAGAATATGAGTATGGAAGCATGTGAGCAGAAGTGTTTGAGTAACTGCTCTTGCCTGGCATATGCCAGTGCAGATATCAGGAATGGAAGAAGTGGATGTATGACCTGGTTCCTTGCCAAAAAGGGGATGTTGTTGATTTTGGTATTGCCAACTATTGCAATGATATTCATTATATTTTCTGCACGTTGGTGTTCAAGGAGGAAGACAAAAATGTGTAAAAGGGAAGCCAAAAATGGTTACTGGCACAAAACATGCTACTTCAATCTATGTTTTAAAGGATCTCTGAGGCAAATGAAGCATGATGACAGTAAAATTCCACTGACCTCGCATGATGGGGAAATGAACCAAGACCTGGCATTTTTTGACGTAAACAGCATAGTTGTTGCCACAGACAACTTTTCCATTGCTAACAAGCTCGGCGAAGGTGGTTTTGGCTCAGTCTATAAGGTAGCTACATATCCCTCAAACCTTCAGCACAGGAACCTGGTGAGGCTTTATGGTTGCTGCATCAACTCAGAAGAGAAGATGCTGATCTATGATACTTCCCCAATGAGCATTGGACTCTGCAACCTCATGAACTCCATCAGATTGCTCATCTTTCTTCTCCTCCAATTCCACAGTGGCACATCCTCCGACACCATTGCTCTGAACCACCGCATCAGAGACGGCGACGTTTTGTCTCCGCCGGAGAAAGATTTAAACTTGGAGTTTGGTACAACAATGTGCCCACCCAAACCATCGTCTGGGTCGCAAACAGAGACAACCCAGTTCATGATAGCTCTGGAATTCTATCCATTCATGGAATTGAGGCCTTGTGATATCCGGAAAGGACCAAAGCACCCCTCTTTCGTGGCGGACCGGAGTCTGATCTCGGACCGGGCTGAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

321

Amino Acids

36.19

Weight (kDa)

8.31

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAN_2	PF08276	2 - 62	2.4e-19	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	427, 818
AccIII	TCCGGA	1 cut(s)	897
AciI	CCGC	3 cut(s)	730, 758, 929
AclWI	GGATC	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	387, 860
AcuI	CTGAAG	1 cut(s)	530
AfaI	GTAC	1 cut(s)	790
AfiI	CCNNNNNNNGG	3 cut(s)	198, 427, 818
AgsI	TTSAA	2 cut(s)	270, 337
AhdI	GACNNNNNGTC	1 cut(s)	751
AjnI	CCWGG	4 cut(s)	129, 179, 426, 558
AjuI	GAANNNNNNNTTGG	2 cut(s)	489, 521
AleI	CACNNNNGTG	1 cut(s)	262
AluBI	AGCT	3 cut(s)	490, 527, 854
AluI	AGCT	3 cut(s)	490, 527, 854
Alw26I	GTCTC	3 cut(s)	732, 759, 827
AlwI	GGATC	1 cut(s)	361
Aor13HI	TCCGGA	1 cut(s)	897
AoxI	GGCC	1 cut(s)	884
ApeKI	GCWGC	1 cut(s)	579
ApoI	RAATTY	2 cut(s)	387, 860
AspS9I	GGNCC	3 cut(s)	905, 931, 949
AsuC2I	CCSGG	1 cut(s)	953
AsuHPI	GGTGA	2 cut(s)	26, 574
AvaII	GGWCC	3 cut(s)	905, 931, 949
BaeGI	GKGCMC	1 cut(s)	803
BbsI	GAAGAC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	566
BccI	CCATC	4 cut(s)	25, 401, 665, 820
BceAI	ACGGC	1 cut(s)	757
BcgI	CGANNNNNNTGC	2 cut(s)	698, 732
BciT130I	CCWGG	4 cut(s)	131, 181, 428, 560
BcnI	CCSGG	1 cut(s)	953
BcoDI	GTCTC	3 cut(s)	732, 759, 827
BisI	GCNGC	1 cut(s)	580
BlsI	GCNGC	1 cut(s)	581
Bme1390I	CCNGG	5 cut(s)	131, 181, 428, 560, 953
Bme18I	GGWCC	3 cut(s)	905, 931, 949
BmeRI	GACNNNNNGTC	1 cut(s)	751
BmgT120I	GGNCC	3 cut(s)	905, 931, 949
BmiI	GGNNCC	2 cut(s)	185, 557
BmrFI	CCNGG	5 cut(s)	131, 181, 428, 560, 953
BmrI	ACTGGG	1 cut(s)	835
BmsI	GCATC	3 cut(s)	591, 591, 741
BmuI	ACTGGG	1 cut(s)	835
BoxI	GACNNNNGTC	1 cut(s)	936
BpiI	GAAGAC	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	953
BsaBI	GATNNNNATC	1 cut(s)	605
BsaWI	WCCGGW	2 cut(s)	897, 933
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 427, 818
Bse1I	ACTGG	3 cut(s)	141, 320, 841
Bse3DI	GCAATG	3 cut(s)	240, 477, 714
Bse8I	GATNNNNATC	1 cut(s)	605
BseAI	TCCGGA	1 cut(s)	897
BseBI	CCWGG	4 cut(s)	131, 181, 428, 560
BseGI	GGATG	4 cut(s)	36, 176, 207, 701
BseJI	GATNNNNATC	1 cut(s)	605
BseLI	CCNNNNNNNGG	3 cut(s)	198, 427, 818
BseMI	GCAATG	3 cut(s)	240, 477, 714
BseMII	CTCAG	4 cut(s)	350, 525, 603, 948
BseNI	ACTGG	3 cut(s)	141, 320, 841
BseRI	GAGGAG	1 cut(s)	671
BseSI	GKGCMC	1 cut(s)	803
BseXI	GCAGC	1 cut(s)	566
BsgI	GTGCAG	2 cut(s)	165, 240
BshFI	GGCC	1 cut(s)	886
BsiSI	CCGG	4 cut(s)	761, 898, 934, 952
BslI	CCNNNNNNNGG	3 cut(s)	198, 427, 818
BsmAI	GTCTC	3 cut(s)	732, 759, 827
BsmBI	CGTCTC	1 cut(s)	732
BsnI	GGCC	1 cut(s)	886
Bsp1286I	GDGCHC	1 cut(s)	803
Bsp13I	TCCGGA	1 cut(s)	897
Bsp143I	GATC	3 cut(s)	353, 606, 942
BspACI	CCGC	3 cut(s)	730, 758, 929
BspANI	GGCC	1 cut(s)	886
BspCNI	CTCAG	4 cut(s)	351, 524, 602, 949
BspEI	TCCGGA	1 cut(s)	897
BspHI	TCATGA	2 cut(s)	648, 846
BspLI	GGNNCC	2 cut(s)	185, 557
BspPI	GGATC	1 cut(s)	361
BsrDI	GCAATG	3 cut(s)	240, 477, 714
BsrI	ACTGG	3 cut(s)	141, 320, 841
BssMI	GATC	3 cut(s)	353, 606, 942
Bst2UI	CCWGG	4 cut(s)	131, 181, 428, 560
Bst4CI	ACNGT	4 cut(s)	14, 64, 383, 695
Bst6I	CTCTTC	1 cut(s)	588
BstDEI	CTNAG	4 cut(s)	359, 511, 589, 957
BstF5I	GGATG	4 cut(s)	36, 176, 207, 701
BstKTI	GATC	3 cut(s)	356, 609, 945
BstMAI	GTCTC	3 cut(s)	732, 759, 827
BstMBI	GATC	3 cut(s)	353, 606, 942
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNI	CCWGG	4 cut(s)	131, 181, 428, 560
BstNSI	RCATGY	2 cut(s)	99, 330
BstPAI	GACNNNNGTC	1 cut(s)	936
BstSCI	CCNGG	5 cut(s)	129, 179, 426, 558, 951
BstSLI	GKGCMC	1 cut(s)	803
BstV1I	GCAGC	1 cut(s)	566
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	886
BtsCI	GGATG	4 cut(s)	36, 176, 207, 701
BtsIMutI	CAGTG	3 cut(s)	148, 392, 700
CciI	TCATGA	2 cut(s)	648, 846
Cfr13I	GGNCC	3 cut(s)	905, 931, 949
CpoI	CGGWCCG	2 cut(s)	931, 949
CsiI	ACCWGGT	2 cut(s)	179, 558
Csp6I	GTAC	1 cut(s)	789
CspI	CGGWCCG	2 cut(s)	931, 949
CviAII	CATG	7 cut(s)	96, 327, 374, 404, 649, 847, 874
CviJI	RGCY	8 cut(s)	302, 490, 510, 527, 568, 854, 886, 956
CviKI_1	RGCY	8 cut(s)	302, 490, 510, 527, 568, 854, 886, 956
CviQI	GTAC	1 cut(s)	789
DdeI	CTNAG	4 cut(s)	359, 511, 589, 957
DpnI	GATC	3 cut(s)	355, 608, 944
DpnII	GATC	3 cut(s)	353, 606, 942
DraI	TTTAAA	2 cut(s)	349, 774
DriI	GACNNNNNGTC	1 cut(s)	751
Eam1104I	CTCTTC	1 cut(s)	588
Eam1105I	GACNNNNNGTC	1 cut(s)	751
EarI	CTCTTC	1 cut(s)	588
EciI	GGCGGA	2 cut(s)	747, 944
Eco147I	AGGCCT	1 cut(s)	886
Eco32I	GATATC	2 cut(s)	151, 895
Eco47I	GGWCC	3 cut(s)	905, 931, 949
Eco57I	CTGAAG	1 cut(s)	530
EcoRI	GAATTC	1 cut(s)	860
EcoRII	CCWGG	4 cut(s)	129, 179, 426, 558
EcoRV	GATATC	2 cut(s)	151, 895
Esp3I	CGTCTC	1 cut(s)	732
FaeI	CATG	7 cut(s)	99, 330, 377, 407, 652, 850, 877
FatI	CATG	7 cut(s)	95, 326, 373, 403, 648, 846, 873
FauNDI	CATATG	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	580
FokI	GGATG	4 cut(s)	43, 183, 214, 688
Fsp4HI	GCNGC	1 cut(s)	580
GluI	GCNGC	1 cut(s)	580
HaeIII	GGCC	1 cut(s)	886
HapII	CCGG	4 cut(s)	761, 898, 934, 952
Hin1II	CATG	7 cut(s)	99, 330, 377, 407, 652, 850, 877
HinfI	GANTC	2 cut(s)	636, 937
HpaII	CCGG	4 cut(s)	761, 898, 934, 952
HphI	GGTGA	2 cut(s)	26, 574
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	8 cut(s)	360, 592, 662, 709, 723, 737, 942, 949
Hpy188III	TCNNGA	6 cut(s)	50, 154, 649, 847, 857, 898
Hpy8I	GTNNAC	1 cut(s)	445
Hpy99I	CGWCG	1 cut(s)	749
HpyAV	CCTTC	2 cut(s)	491, 554
HpyCH4III	ACNGT	4 cut(s)	14, 64, 383, 695
HpyCH4IV	ACGT	3 cut(s)	259, 441, 747
HpyCH4V	TGCA	5 cut(s)	146, 233, 257, 582, 642
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	4 cut(s)	359, 511, 589, 957
HpySE526I	ACGT	3 cut(s)	259, 441, 747
Hsp92II	CATG	7 cut(s)	99, 330, 377, 407, 652, 850, 877
Kpn2I	TCCGGA	1 cut(s)	897
Kzo9I	GATC	3 cut(s)	353, 606, 942
Lsp1109I	GCAGC	1 cut(s)	566
LweI	GCATC	3 cut(s)	591, 591, 741
MabI	ACCWGGT	2 cut(s)	179, 558
MaeII	ACGT	3 cut(s)	259, 441, 747
MaeIII	GTNAC	2 cut(s)	116, 311
MalI	GATC	3 cut(s)	355, 608, 944
MboI	GATC	3 cut(s)	353, 606, 942
MboII	GAAGA	5 cut(s)	174, 289, 605, 610, 668
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	1 cut(s)	803
MluCI	AATT	5 cut(s)	68, 387, 686, 860, 878
MlyI	GAGTC	2 cut(s)	630, 946
MmeI	TCCRAC	1 cut(s)	732
MroI	TCCGGA	1 cut(s)	897
MseI	TTAA	2 cut(s)	348, 773
MslI	CAYNNNNRTG	1 cut(s)	262
MspI	CCGG	4 cut(s)	761, 898, 934, 952
MspR9I	CCNGG	5 cut(s)	131, 181, 428, 560, 953
MvaI	CCWGG	4 cut(s)	131, 181, 428, 560
MwoI	GCNNNNNNNGC	1 cut(s)	370
NciI	CCSGG	1 cut(s)	953
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	3 cut(s)	353, 606, 942
NlaIII	CATG	7 cut(s)	99, 330, 377, 407, 652, 850, 877
NlaIV	GGNNCC	2 cut(s)	185, 557
NmeAIII	GCCGAG	1 cut(s)	471
NspI	RCATGY	2 cut(s)	99, 330
OliI	CACNNNNGTG	1 cut(s)	262
PagI	TCATGA	2 cut(s)	648, 846
PceI	AGGCCT	1 cut(s)	886
PflMI	CCANNNNNTGG	2 cut(s)	427, 818
PkrI	GCNGC	1 cut(s)	581
PleI	GAGTC	2 cut(s)	630, 945
PpsI	GAGTC	2 cut(s)	630, 945
PshAI	GACNNNNGTC	1 cut(s)	936
Psp6I	CCWGG	4 cut(s)	129, 179, 426, 558
PspGI	CCWGG	4 cut(s)	129, 179, 426, 558
PspN4I	GGNNCC	2 cut(s)	185, 557
PspPI	GGNCC	3 cut(s)	905, 931, 949
PsuI	RGATCY	1 cut(s)	353
RsaI	GTAC	1 cut(s)	790
RsaNI	GTAC	1 cut(s)	789
RseI	CAYNNNNRTG	1 cut(s)	262
Rsr2I	CGGWCCG	2 cut(s)	931, 949
RsrII	CGGWCCG	2 cut(s)	931, 949
SaqAI	TTAA	2 cut(s)	348, 773
SatI	GCNGC	1 cut(s)	580
Sau3AI	GATC	3 cut(s)	353, 606, 942
Sau96I	GGNCC	3 cut(s)	905, 931, 949
SchI	GAGTC	2 cut(s)	630, 946
ScrFI	CCNGG	5 cut(s)	131, 181, 428, 560, 953
SduI	GDGCHC	1 cut(s)	803
SexAI	ACCWGGT	2 cut(s)	179, 558
SfaNI	GCATC	3 cut(s)	591, 591, 741
SinI	GGWCC	3 cut(s)	905, 931, 949
SmiMI	CAYNNNNRTG	1 cut(s)	262
Sse9I	AATT	5 cut(s)	68, 387, 686, 860, 878
SseBI	AGGCCT	1 cut(s)	886
SsiI	CCGC	3 cut(s)	730, 758, 929
StuI	AGGCCT	1 cut(s)	886
StyD4I	CCNGG	5 cut(s)	129, 179, 426, 558, 951
TaaI	ACNGT	4 cut(s)	14, 64, 383, 695
TaiI	ACGT	3 cut(s)	262, 444, 750
TaqI	TCGA	1 cut(s)	66
TasI	AATT	5 cut(s)	68, 387, 686, 860, 878
Tru1I	TTAA	2 cut(s)	348, 773
Tru9I	TTAA	2 cut(s)	348, 773
TscAI	CASTG	3 cut(s)	148, 399, 700
TseI	GCWGC	1 cut(s)	579
TspDTI	ATGAA	6 cut(s)	232, 383, 431, 665, 835, 862
TspRI	CASTG	3 cut(s)	148, 399, 700
Van91I	CCANNNNNTGG	2 cut(s)	427, 818
VpaK11BI	GGWCC	3 cut(s)	905, 931, 949
XapI	RAATTY	2 cut(s)	387, 860
XceI	RCATGY	2 cut(s)	99, 330
XcmI	CCANNNNNNNNNTGG	2 cut(s)	67, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.