RchiOBHm_Chr5g0005281

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
3395408 .. 3395638
231 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28651

Sequence Viewer

Length: 150 bp
ATGGTGTCAGATGGCAAGAACTGGAGACTTGGCTCAGAGGCACGAAATCCATGCAGCCTTTATGGAACATGTGGACCTTTTGGTACTTGCAACCCTTCTGAATCTCCAATATGCAAGTGTTTGAAAAGGGTTTGTACTCAAGTCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

49

Amino Acids

5.28

Weight (kDa)

8.65

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 3 - 42 6.9e-10 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 85, 136
AflIII ACRYGT 1 cut(s) 68
AgsI TTSAA 1 cut(s) 124
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 74
AvaII GGWCC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 66
BccI CCATC 1 cut(s) 5
BcgI CGANNNNNNTGC 2 cut(s) 33, 67
BcoDI GTCTC 1 cut(s) 19
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 74
BpmI CTGGAG 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 47
BsrI ACTGG 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 19
BstNSI RCATGY 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 74
Csp6I GTAC 2 cut(s) 84, 135
CviAII CATG 2 cut(s) 51, 69
CviJI RGCY 3 cut(s) 33, 57, 147
CviKI_1 RGCY 3 cut(s) 33, 57, 147
CviQI GTAC 2 cut(s) 84, 135
DdeI CTNAG 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 74
FaeI CATG 2 cut(s) 54, 72
FaiI YATR 4 cut(s) 52, 63, 70, 112
FatI CATG 2 cut(s) 50, 68
Fnu4HI GCNGC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 55
GsuI CTGGAG 1 cut(s) 43
Hin1II CATG 2 cut(s) 54, 72
HinfI GANTC 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 3 cut(s) 10, 37, 100
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 105
HpyCH4V TGCA 3 cut(s) 54, 90, 114
HpyF3I CTNAG 1 cut(s) 34
Hsp92II CATG 2 cut(s) 54, 72
LpnPI CCDG 1 cut(s) 7
Lsp1109I GCAGC 1 cut(s) 66
MnlI CCTC 1 cut(s) 31
MspA1I CMGCKG 1 cut(s) 147
NlaIII CATG 2 cut(s) 54, 72
NspI RCATGY 1 cut(s) 72
PciI ACATGT 1 cut(s) 68
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 56
PscI ACATGT 1 cut(s) 68
PspPI GGNCC 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 147
RsaI GTAC 2 cut(s) 85, 136
RsaNI GTAC 2 cut(s) 84, 135
SatI GCNGC 1 cut(s) 55
Sau96I GGNCC 1 cut(s) 74
SetI ASST 2 cut(s) 79, 149
SgeI CNNG 8 cut(s) 28, 34, 41, 54, 63, 81, 99, 127
SinI GGWCC 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
TatI WGTACW 1 cut(s) 134
TfiI GAWTC 1 cut(s) 101
TseI GCWGC 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 74
XceI RCATGY 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.