RchiOBHm_Chr5g0006081

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
3814835 .. 3815234
400 bp
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UTR
Exon/CDS
Intron
PRQ28723

Sequence Viewer

Length: 258 bp
ATGGCTTCTTATATTGTTGCATTTTGCCGGAAGACTGTGATTCAGTGCGGAAATATAGTGAGATTGTGGATAGCAGAGGGATTTGTGGAACAAGTTCGAGGGGCTAAGTTAGAAGGGATAGCTAACAGCTACATAGCAGAGCTCAGTGGCCGATTCATCCTTCAAGTTGTTAGGAGAGAGCCATCTGGTAGGATAAAACAATTTAAGATGCCCCTACGATCTATTACGAGAACTTGCCCTTTCAATTTCAGAAGTTGA

Protein Analysis

85

Amino Acids

9.72

Weight (kDa)

10.57

Isoelectric Point (pI)

52.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 8 - 70 1.6e-12 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 48
AcoI YGGCCR 1 cut(s) 148
AgsI TTSAA 2 cut(s) 164, 244
AluBI AGCT 3 cut(s) 122, 129, 142
AluI AGCT 3 cut(s) 122, 129, 142
Alw21I GWGCWC 1 cut(s) 144
AoxI GGCC 1 cut(s) 148
Asp700I GAANNNNTTC 1 cut(s) 93
BanII GRGCYC 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 144
BccI CCATC 1 cut(s) 190
BmsI GCATC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 38
BseGI GGATG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 157
BshFI GGCC 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 144
BsiSI CCGG 1 cut(s) 28
BsnI GGCC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 218
BspACI CCGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 156
BssMI GATC 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 105, 143
BstF5I GGATG 1 cut(s) 156
BstKTI GATC 1 cut(s) 221
BstMBI GATC 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 38
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 2 cut(s) 50, 151
CviJI RGCY 7 cut(s) 5, 104, 122, 129, 142, 150, 181
CviKI_1 RGCY 7 cut(s) 5, 104, 122, 129, 142, 150, 181
DdeI CTNAG 2 cut(s) 105, 143
DpnI GATC 1 cut(s) 220
DpnII GATC 1 cut(s) 218
EaeI YGGCCR 1 cut(s) 148
Ecl136II GAGCTC 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 144
Eco53kI GAGCTC 1 cut(s) 142
EcoICRI GAGCTC 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 144
FaiI YATR 3 cut(s) 12, 56, 134
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 144
HaeIII GGCC 1 cut(s) 150
HapII CCGG 1 cut(s) 28
HinfI GANTC 2 cut(s) 40, 153
HpaII CCGG 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 251
HpyAV CCTTC 2 cut(s) 107, 170
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 20
HpyF3I CTNAG 2 cut(s) 105, 143
Kzo9I GATC 1 cut(s) 218
LpnPI CCDG 2 cut(s) 41, 171
LweI GCATC 1 cut(s) 198
MalI GATC 1 cut(s) 220
MboI GATC 1 cut(s) 218
MboII GAAGA 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 2 cut(s) 200, 244
MnlI CCTC 2 cut(s) 70, 92
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 1 cut(s) 204
MspI CCGG 1 cut(s) 28
NdeII GATC 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 2 cut(s) 40, 153
Psp124BI GAGCTC 1 cut(s) 144
SacI GAGCTC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 204
Sau3AI GATC 1 cut(s) 218
SduI GDGCHC 1 cut(s) 144
SetI ASST 3 cut(s) 124, 131, 144
SfaNI GCATC 1 cut(s) 198
SgeI CNNG 7 cut(s) 40, 104, 110, 176, 198, 240, 246
Sse9I AATT 2 cut(s) 200, 244
SsiI CCGC 1 cut(s) 48
SstI GAGCTC 1 cut(s) 144
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 97
TasI AATT 2 cut(s) 200, 244
TfiI GAWTC 2 cut(s) 40, 153
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 2 cut(s) 50, 151
TspDTI ATGAA 1 cut(s) 145
TspRI CASTG 2 cut(s) 50, 151
XmnI GAANNNNTTC 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.