RchiOBHm_Chr5g0010941

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
7253789 .. 7255700
1912 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29165

Sequence Viewer

Length: 1587 bp
ATGTTTAACAACAAATTAAGTGGATTAATTCCAACCTCAATAAGAACTCTGAAAAATCTCCAAGGTTTGTCTTTGGGCGGTAACAACTTTCAAGGACACATCCCTGATGAACTTTGTCGACTAAAAAACCTTGTTGTGTTAGGGTTGTATGGTAACCAGCTCTCTGGCTCTATACCTTCTTGCTTGGGTCATCTAGCCACCGCACTAAGAACTCTAGCTTTAGGGTCCAATTTATTGAATTCAACAATACCAACTAACTTGTGGGGACTTTCAGATCTCCTGTATGTATACTTGTCATCCAATAATCTAAGTGGATCTCTCTCAGAAGATGTTGGTAAGCTGAAAGCTATCATAGAGATAGATTTATCAAACAACCACTTATCCGGTAGCATACCGAGCAGCATTGGGAATCTACAAAGCTTGGTCATGCTCTCCTTGGAGAATAATAATTTTGAAGGCCTTATTCCTAATTCACTTGGTAAGTCGCTCAGCTTGGAAAATTTGGATTTATCCAGAAATAATCTGTCTGGATTGATTCCAAAGTCACTAGAATCACTCAAATATCTCAAAATTTTAAATTTGTCTTTCAACAAACTCCAAGGAGAAATTCCAACGGGTGGACCTTTCCAAAACCTCTCTGCTCAATCATTTGTTTCGAGCGGGGAACTCTGTGGTGCATCTCGATTCCTTGTCCCATCATGCAATAATAGTACATTTGAAGCACATTTGAAGTCCAGTATATCAGGGATCTTGTCAGCATTGTTCATAGCTACCTTCATTTGGATAGTGATACTATGCCGAAGAAAGAATGTGGAAGCTGCAAAAGAGATTACATTGTTCCCTCAACTTCTACAGAGAAGAGTTTCGCACCTCGAACTGGTTCGAGCAACAAATACATTTAATGAAAGCAACTTACTTGGCAGTGGTGGTTTTGGCTCAGTATATAAAGTAACATTTTCTGATGGGATAGATGTGGCTATAAAGGTTGAGTATTATGATAGATGTTGCATCGGCATTGGAATACCTTCATCATGGAATCATGGCTATGGAACACCTATTGTTCATTGTGATTTGAAGCCCAGCAATATCCTTCTGGATAAGGATATGAGTGCACATGTAGCTGACTTTGGCATTGCAAAACTCTTGTGTGGAAGAGATTCGATGACCCGAACCATCACACAAGCCACAATTGGATATATGGCCCCAGAGTATGGAATGGAAGGAATAGTTACTAGAAGAAGGAATGTTTACAGTTTTGGTATTGTACTGATGGAAACATTCACAAAAAAGAAGCCAACAGATGAGATGTTTGGGGACATCAGTTTGAAGCAATGGGTTGCAAATTCACCATTACTTGATGTCGTGGATGCCAACTTACTTGGGATTGAAGAAGGGGATCGTGAATTTGAGAACAATAGGGAGTGTTTATCATCCATTATGAGATTAGCTCTAGCTTGTTCCATCGAATCACAAGATGGGAGGATAAATATGCATGAGGCTCTAGCCACTCTAAACAAAATCAAAAACAAGTTTTTCAAGGATGCTGCTCCGGAAGGAGTTGTGGTGTTGAACCATCCTCTTGTTTAG

Protein Analysis

528

Amino Acids

57.56

Weight (kDa)

6.8

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 68 - 199 5.4e-11 Leucine-rich repeat region
LRR_8 PF13855 144 - 199 6.7e-06 Leucine rich repeat
Pkinase PF00069 349 - 502 6.4e-18 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 352 - 500 7.1e-15 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 617, 1211
AccBSI CCGCTC 1 cut(s) 660
AccI GTMKAC 2 cut(s) 118, 288
AccIII TCCGGA 1 cut(s) 1549
AciI CCGC 3 cut(s) 78, 201, 660
AclWI GGATC 3 cut(s) 322, 755, 1404
AcsI RAATTY 7 cut(s) 238, 499, 570, 577, 606, 1342, 1403
AfaI GTAC 2 cut(s) 712, 1266
AfiI CCNNNNNNNGG 4 cut(s) 617, 780, 877, 1211
AflIII ACRYGT 1 cut(s) 1114
AjuI GAANNNNNNNTTGG 2 cut(s) 591, 623
Alw21I GWGCWC 1 cut(s) 1114
Alw44I GTGCAC 1 cut(s) 1110
AlwI GGATC 3 cut(s) 322, 755, 1404
Aor13HI TCCGGA 1 cut(s) 1549
AoxI GGCC 2 cut(s) 457, 1200
ApaLI GTGCAC 1 cut(s) 1110
ApeKI GCWGC 3 cut(s) 399, 818, 1544
ApoI RAATTY 7 cut(s) 238, 499, 570, 577, 606, 1342, 1403
AseI ATTAAT 1 cut(s) 26
Asp700I GAANNNNTTC 4 cut(s) 862, 879, 1024, 1156
AspS9I GGNCC 3 cut(s) 225, 620, 1201
AsuHPI GGTGA 1 cut(s) 1338
AvaII GGWCC 2 cut(s) 225, 620
BaeGI GKGCMC 1 cut(s) 1114
Bbv12I GWGCWC 1 cut(s) 1114
BbvI GCAGC 3 cut(s) 411, 805, 1531
BccI CCATC 7 cut(s) 703, 956, 1181, 1264, 1469, 1469, 1581
BfaI CTAG 6 cut(s) 194, 215, 548, 1233, 1451, 1502
BfmI CTRYAG 1 cut(s) 851
BglII AGATCT 1 cut(s) 274
BisI GCNGC 3 cut(s) 400, 819, 1545
BlpI GCTNAGC 1 cut(s) 488
BlsI GCNGC 3 cut(s) 401, 820, 1546
Bme18I GGWCC 2 cut(s) 225, 620
BmgT120I GGNCC 3 cut(s) 225, 620, 1201
BmiI GGNNCC 2 cut(s) 226, 1203
BmsI GCATC 4 cut(s) 686, 1017, 1357, 1531
BplI GAGNNNNNCTC 2 cut(s) 1432, 1464
Bpu1102I GCTNAGC 1 cut(s) 488
BsaJI CCNNGG 3 cut(s) 61, 435, 598
BsaWI WCCGGW 2 cut(s) 383, 1549
BsaXI ACNNNNNCTCC 2 cut(s) 1548, 1578
Bsc4I CCNNNNNNNGG 4 cut(s) 617, 780, 877, 1211
Bse1I ACTGG 2 cut(s) 735, 882
Bse3DI GCAATG 2 cut(s) 1131, 1337
BseAI TCCGGA 1 cut(s) 1549
BseDI CCNNGG 3 cut(s) 61, 435, 598
BseGI GGATG 6 cut(s) 99, 296, 1372, 1430, 1546, 1573
BseLI CCNNNNNNNGG 4 cut(s) 617, 780, 877, 1211
BseMI GCAATG 2 cut(s) 1131, 1337
BseMII CTCAG 3 cut(s) 336, 502, 951
BseNI ACTGG 2 cut(s) 735, 882
BseSI GKGCMC 1 cut(s) 1114
BseXI GCAGC 3 cut(s) 411, 805, 1531
BseYI CCCAGC 1 cut(s) 1079
BshFI GGCC 2 cut(s) 459, 1202
BsiHKAI GWGCWC 1 cut(s) 1114
BsiSI CCGG 2 cut(s) 384, 1550
BslFI GGGAC 3 cut(s) 279, 677, 1328
BslI CCNNNNNNNGG 4 cut(s) 617, 780, 877, 1211
BsmFI GGGAC 3 cut(s) 279, 677, 1328
BsnI GGCC 2 cut(s) 459, 1202
Bsp1286I GDGCHC 1 cut(s) 1114
Bsp13I TCCGGA 1 cut(s) 1549
Bsp143I GATC 4 cut(s) 274, 314, 747, 1396
Bsp1720I GCTNAGC 1 cut(s) 488
BspACI CCGC 3 cut(s) 78, 201, 660
BspANI GGCC 2 cut(s) 459, 1202
BspCNI CTCAG 3 cut(s) 335, 501, 950
BspEI TCCGGA 1 cut(s) 1549
BspLI GGNNCC 2 cut(s) 226, 1203
BspPI GGATC 3 cut(s) 322, 755, 1404
BsrBI CCGCTC 1 cut(s) 660
BsrDI GCAATG 2 cut(s) 1131, 1337
BsrI ACTGG 2 cut(s) 735, 882
BssECI CCNNGG 3 cut(s) 61, 435, 598
BssMI GATC 4 cut(s) 274, 314, 747, 1396
BssNAI GTATAC 1 cut(s) 289
BssT1I CCWWGG 3 cut(s) 61, 435, 598
Bst1107I GTATAC 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 1253
Bst6I CTCTTC 2 cut(s) 853, 1147
BstDEI CTNAG 5 cut(s) 206, 308, 322, 488, 937
BstEII GGTNACC 1 cut(s) 152
BstF5I GGATG 6 cut(s) 99, 296, 1372, 1430, 1546, 1573
BstKTI GATC 4 cut(s) 277, 317, 750, 1399
BstMBI GATC 4 cut(s) 274, 314, 747, 1396
BstMWI GCNNNNNNNGC 2 cut(s) 396, 1118
BstNSI RCATGY 1 cut(s) 1118
BstPI GGTNACC 1 cut(s) 152
BstSFI CTRYAG 1 cut(s) 851
BstSLI GKGCMC 1 cut(s) 1114
BstV1I GCAGC 3 cut(s) 411, 805, 1531
BstX2I RGATCY 3 cut(s) 274, 314, 747
BstXI CCANNNNNNTGG 1 cut(s) 164
BstYI RGATCY 3 cut(s) 274, 314, 747
BstZ17I GTATAC 1 cut(s) 289
BsuRI GGCC 2 cut(s) 459, 1202
BtsCI GGATG 6 cut(s) 99, 296, 1372, 1430, 1546, 1573
BtsI GCAGTG 1 cut(s) 928
BtsIMutI CAGTG 1 cut(s) 928
Cfr13I GGNCC 3 cut(s) 225, 620, 1201
Csp6I GTAC 2 cut(s) 711, 1265
CspCI CAANNNNNGTGG 1 cut(s) 36
CviAII CATG 6 cut(s) 427, 699, 1032, 1040, 1115, 1493
CviQI GTAC 2 cut(s) 711, 1265
DdeI CTNAG 5 cut(s) 206, 308, 322, 488, 937
DpnI GATC 4 cut(s) 276, 316, 749, 1398
DpnII GATC 4 cut(s) 274, 314, 747, 1396
DraI TTTAAA 1 cut(s) 576
Eam1104I CTCTTC 2 cut(s) 853, 1147
EarI CTCTTC 2 cut(s) 853, 1147
Eco130I CCWWGG 3 cut(s) 61, 435, 598
Eco147I AGGCCT 1 cut(s) 459
Eco47I GGWCC 2 cut(s) 225, 620
Eco91I GGTNACC 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 238
EcoT14I CCWWGG 3 cut(s) 61, 435, 598
EcoT22I ATGCAT 1 cut(s) 1494
ErhI CCWWGG 3 cut(s) 61, 435, 598
FaeI CATG 6 cut(s) 430, 702, 1035, 1043, 1118, 1496
FaqI GGGAC 3 cut(s) 279, 677, 1328
FatI CATG 6 cut(s) 426, 698, 1031, 1039, 1114, 1492
FauI CCCGC 1 cut(s) 653
FblI GTMKAC 2 cut(s) 118, 288
Fnu4HI GCNGC 3 cut(s) 400, 819, 1545
FokI GGATG 6 cut(s) 86, 283, 1379, 1417, 1553, 1560
Fsp4HI GCNGC 3 cut(s) 400, 819, 1545
FspBI CTAG 6 cut(s) 194, 215, 548, 1233, 1451, 1502
GluI GCNGC 3 cut(s) 400, 819, 1545
GsaI CCCAGC 1 cut(s) 1083
HaeIII GGCC 2 cut(s) 459, 1202
HapII CCGG 2 cut(s) 384, 1550
Hin1II CATG 6 cut(s) 430, 702, 1035, 1043, 1118, 1496
HincII GTYRAC 1 cut(s) 119
HindII GTYRAC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 418
HinfI GANTC 7 cut(s) 409, 535, 551, 684, 1036, 1157, 1466
HpaII CCGG 2 cut(s) 384, 1550
HphI GGTGA 1 cut(s) 1338
Hpy166II GTNNAC 5 cut(s) 119, 289, 620, 1112, 1249
Hpy188I TCNGA 4 cut(s) 51, 274, 325, 961
Hpy188III TCNNGA 6 cut(s) 513, 528, 681, 1094, 1400, 1550
Hpy8I GTNNAC 5 cut(s) 119, 289, 620, 1112, 1249
HpyAV CCTTC 9 cut(s) 186, 449, 784, 1035, 1100, 1214, 1233, 1385, 1547
HpyCH4III ACNGT 1 cut(s) 1253
HpyCH4V TGCA 8 cut(s) 677, 702, 821, 1008, 1112, 1136, 1340, 1492
HpyF10VI GCNNNNNNNGC 2 cut(s) 396, 1118
HpyF3I CTNAG 5 cut(s) 206, 308, 322, 488, 937
Hsp92II CATG 6 cut(s) 430, 702, 1035, 1043, 1118, 1496
Kpn2I TCCGGA 1 cut(s) 1549
Kzo9I GATC 4 cut(s) 274, 314, 747, 1396
LmnI GCTCC 1 cut(s) 1552
Lsp1109I GCAGC 3 cut(s) 411, 805, 1531
LweI GCATC 4 cut(s) 686, 1017, 1357, 1531
MaeI CTAG 6 cut(s) 194, 215, 548, 1233, 1451, 1502
MaeIII GTNAC 5 cut(s) 80, 152, 543, 949, 1228
MalI GATC 4 cut(s) 276, 316, 749, 1398
MbiI CCGCTC 1 cut(s) 660
MboI GATC 4 cut(s) 274, 314, 747, 1396
MboII GAAGA 6 cut(s) 338, 813, 870, 1164, 1248, 1400
MfeI CAATTG 1 cut(s) 1188
MflI RGATCY 3 cut(s) 274, 314, 747
MhlI GDGCHC 1 cut(s) 1114
MmeI TCCRAC 2 cut(s) 56, 635
MnlI CCTC 7 cut(s) 46, 644, 852, 881, 1473, 1489, 1587
Mph1103I ATGCAT 1 cut(s) 1494
MroI TCCGGA 1 cut(s) 1549
MroXI GAANNNNTTC 4 cut(s) 862, 879, 1024, 1156
MseI TTAA 5 cut(s) 6, 17, 26, 575, 900
MslI CAYNNNNRTG 1 cut(s) 1044
MspI CCGG 2 cut(s) 384, 1550
MunI CAATTG 1 cut(s) 1188
MwoI GCNNNNNNNGC 2 cut(s) 396, 1118
NdeII GATC 4 cut(s) 274, 314, 747, 1396
NlaIII CATG 6 cut(s) 430, 702, 1035, 1043, 1118, 1496
NlaIV GGNNCC 2 cut(s) 226, 1203
NmuCI GTSAC 1 cut(s) 543
NsiI ATGCAT 1 cut(s) 1494
NspI RCATGY 1 cut(s) 1118
PceI AGGCCT 1 cut(s) 459
PciI ACATGT 1 cut(s) 1114
PdmI GAANNNNTTC 4 cut(s) 862, 879, 1024, 1156
PfeI GAWTC 7 cut(s) 409, 535, 551, 684, 1036, 1157, 1466
PflMI CCANNNNNTGG 2 cut(s) 617, 1211
PkrI GCNGC 3 cut(s) 401, 820, 1546
PscI ACATGT 1 cut(s) 1114
PshBI ATTAAT 1 cut(s) 26
PspEI GGTNACC 1 cut(s) 152
PspFI CCCAGC 1 cut(s) 1079
PspN4I GGNNCC 2 cut(s) 226, 1203
PspPI GGNCC 3 cut(s) 225, 620, 1201
PsuI RGATCY 3 cut(s) 274, 314, 747
RsaI GTAC 2 cut(s) 712, 1266
RsaNI GTAC 2 cut(s) 711, 1265
RseI CAYNNNNRTG 1 cut(s) 1044
SalI GTCGAC 1 cut(s) 117
SaqAI TTAA 5 cut(s) 6, 17, 26, 575, 900
SatI GCNGC 3 cut(s) 400, 819, 1545
Sau3AI GATC 4 cut(s) 274, 314, 747, 1396
Sau96I GGNCC 3 cut(s) 225, 620, 1201
SduI GDGCHC 1 cut(s) 1114
SfaNI GCATC 4 cut(s) 686, 1017, 1357, 1531
SfcI CTRYAG 1 cut(s) 851
SinI GGWCC 2 cut(s) 225, 620
SmiMI CAYNNNNRTG 1 cut(s) 1044
SseBI AGGCCT 1 cut(s) 459
SsiI CCGC 3 cut(s) 78, 201, 660
SspMI CTAG 6 cut(s) 194, 215, 548, 1233, 1451, 1502
StuI AGGCCT 1 cut(s) 459
StyI CCWWGG 3 cut(s) 61, 435, 598
TaaI ACNGT 1 cut(s) 1253
TaqI TCGA 7 cut(s) 118, 656, 682, 873, 883, 1160, 1464
TatI WGTACW 2 cut(s) 710, 1264
TfiI GAWTC 7 cut(s) 409, 535, 551, 684, 1036, 1157, 1466
Tru1I TTAA 5 cut(s) 6, 17, 26, 575, 900
Tru9I TTAA 5 cut(s) 6, 17, 26, 575, 900
TscAI CASTG 1 cut(s) 928
TseFI GTSAC 1 cut(s) 543
TseI GCWGC 3 cut(s) 399, 818, 1544
Tsp45I GTSAC 1 cut(s) 543
TspDTI ATGAA 6 cut(s) 123, 754, 766, 918, 1017, 1052
TspRI CASTG 1 cut(s) 928
Van91I CCANNNNNTGG 2 cut(s) 617, 1211
VneI GTGCAC 1 cut(s) 1110
VpaK11BI GGWCC 2 cut(s) 225, 620
VspI ATTAAT 1 cut(s) 26
XapI RAATTY 7 cut(s) 238, 499, 570, 577, 606, 1342, 1403
XceI RCATGY 1 cut(s) 1118
XcmI CCANNNNNNNNNTGG 1 cut(s) 258
XmiI GTMKAC 2 cut(s) 118, 288
XmnI GAANNNNTTC 4 cut(s) 862, 879, 1024, 1156
XspI CTAG 6 cut(s) 194, 215, 548, 1233, 1451, 1502
Zsp2I ATGCAT 1 cut(s) 1494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.