RchiOBHm_Chr5g0011181

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
7426112 .. 7426327
216 bp
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UTR
Exon/CDS
Intron
PRQ29187

Sequence Viewer

Length: 216 bp
ATGGTCATATTACGCAGAAAAATGAGTATTGTGCAAGCTGCAACAGAGACTGCCTTGTTACCTCTTCTTCCATTGAGAAAAGTTTCATACCTCCAACTTCAAAGGGTCACAAATGGATTTGCTGATAGCAACTTGCTTGGTATTGGGAGTTTTGGCTCACTATACAAAGGAACACTTTCAGACAGGATTGACGTCGCCATAAAGGTTTATTTATAA

Protein Analysis

71

Amino Acids

7.84

Weight (kDa)

10.11

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 214
AatII GACGTC 1 cut(s) 195
AcyI GRCGYC 1 cut(s) 192
AgsI TTSAA 1 cut(s) 101
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 41
AlwNI CAGNNNCTG 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 38
Asp700I GAANNNNTTC 2 cut(s) 82, 175
BbvI GCAGC 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 41
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 192
BseXI GCAGC 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 41
BssNI GRCGYC 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 36
CaiI CAGNNNCTG 1 cut(s) 50
CviJI RGCY 2 cut(s) 38, 156
CviKI_1 RGCY 2 cut(s) 38, 156
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
FaiI YATR 5 cut(s) 8, 88, 163, 200, 214
FalI AAGNNNNNCTT 2 cut(s) 159, 191
Fnu4HI GCNGC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 39
Hin1I GRCGYC 1 cut(s) 192
Hpy188I TCNGA 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 197
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 2 cut(s) 34, 41
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 1 cut(s) 192
LpnPI CCDG 1 cut(s) 169
Lsp1109I GCAGC 1 cut(s) 25
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 2 cut(s) 57, 106
MboII GAAGA 2 cut(s) 56, 59
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 2 cut(s) 72, 101
MroXI GAANNNNTTC 2 cut(s) 82, 175
NmuCI GTSAC 1 cut(s) 106
PdmI GAANNNNTTC 2 cut(s) 82, 175
PkrI GCNGC 1 cut(s) 40
PsiI TTATAA 1 cut(s) 214
PstNI CAGNNNCTG 1 cut(s) 50
SatI GCNGC 1 cut(s) 39
SetI ASST 5 cut(s) 40, 64, 93, 195, 207
SgeI CNNG 5 cut(s) 47, 67, 145, 149, 196
TaiI ACGT 1 cut(s) 195
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 75
XmnI GAANNNNTTC 2 cut(s) 82, 175
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.