RchiOBHm_Chr5g0011301

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
7482834 .. 7485698
2865 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29199

Sequence Viewer

Length: 1188 bp
ATGACTTTATACATATATGTTACAATTTCAGACTATTTTCCAAACGAGATCGGCAGTTTGGATAAGCTGGAGAAGTTGTGGTTGGGGTCCAACTTCCTTCAAGGGCATCTTCCTGAAGATATATGTCAACATCATCCAAACATTCAACAAATGCTTTTGGGTGGCAACAAGTTTGATGGTCCACTTCCATCCAAATGGTCTCAATGCAAACAACTTCGCTGGTTAGATTTCTCATCTAACAATTTGAGAGGTACTATACCACATGAGATTGGTGATCTCCCAAATTTAGAGAAATTGAATCTTGGTGTTAATAATCTCAACGGCCTCATCCCATCCTCAGTCTTCAATATGTCCACAATAACAATGATATCGCTTGTTTACAATCAACTCTCAGGTAGCCTCCCATTAAACATAGGCCTTGGGCTTCCAAACCTACAAGAGTTGTATCTAGGAGGAAATAAGCTAGGCGGAGTAATTCCCAAATCTATCTCCAATGTTTCGCAGCTCACAGTCCTAGGCCTGTTGAACAACAGTTTGATAGGTACTATACCACATGAGATTGGAGATCTCCCAAATTTAGAGAAATTGAACCTTGGTGTTAATAATCTCAACGGCCTCATCCCATCCTCAGTCTTCAATATATCCACACTAACAGTGATCTCGCTTGGTTCCAATCAACTCTCAGGTAGCCTCCCATTAAACATAGGCCTTGGGCTTCCAAACCTACAAGAGTTGTATCTAGGAGAAAATAAGCTAGGCGGAGTAATTCCCAAATCCATCTCCAATGTTTCGCAGCTCACAATCCTAAGCATGATCTACAACAATTTGAGAGGTACCTGTACTATACCACATGAGATTGGTGATCTCCCAAATTTAGAGAAATTGAATCTTGGTGTTAATAATCTCAACGGCCTCATACCATCGTCAATCTTCAATATGTCCACAATAACAGTGATATCGCTTGTTTCCAATCAACTCTCAGGTAGCCTCCCATTAAACATAGGCCTTGGGCTTCCAAACCTACAAGAGTTGTATCTAGGAGGAAATAAGCTAGGCGGAGTAATTCCCAAATCTATCTCCAATGTTTCGCAGCTCACAGTCCTAGGCCTGTTGAACAACAGTTTGATAGGTACCTGTAATTCCAACTTTGTTTCGATCAATATTCATTCTATATTGTTCCTATCATGA

Protein Analysis

395

Amino Acids

42.4

Weight (kDa)

5.96

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 71 - 130 5.1e-07 Leucine rich repeat
LRR_8 PF13855 143 - 203 2.7e-08 Leucine rich repeat
LRR_8 PF13855 216 - 276 1.7e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 833, 1130
AccB1I GGYRCC 2 cut(s) 833, 1130
AciI CCGC 3 cut(s) 468, 759, 1056
AcsI RAATTY 3 cut(s) 283, 574, 871
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 5 cut(s) 253, 544, 835, 841, 1132
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AluBI AGCT 7 cut(s) 67, 463, 505, 754, 796, 1051, 1093
AluI AGCT 7 cut(s) 67, 463, 505, 754, 796, 1051, 1093
Alw26I GTCTC 1 cut(s) 204
AoxI GGCC 8 cut(s) 322, 415, 517, 613, 706, 910, 1003, 1105
ApeKI GCWGC 3 cut(s) 502, 793, 1090
ApoI RAATTY 3 cut(s) 283, 574, 871
Asp718I GGTACC 2 cut(s) 833, 1130
AspA2I CCTAGG 2 cut(s) 514, 1102
AspS9I GGNCC 2 cut(s) 87, 179
AsuHPI GGTGA 2 cut(s) 284, 872
AvaII GGWCC 2 cut(s) 87, 179
AvrII CCTAGG 2 cut(s) 514, 1102
BanI GGYRCC 2 cut(s) 833, 1130
BbsI GAAGAC 2 cut(s) 334, 625
BbvI GCAGC 3 cut(s) 514, 805, 1102
BccI CCATC 6 cut(s) 170, 196, 340, 631, 785, 928
BceAI ACGGC 3 cut(s) 337, 628, 925
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 8 cut(s) 449, 464, 515, 740, 755, 1037, 1052, 1103
BglII AGATCT 1 cut(s) 565
BisI GCNGC 3 cut(s) 503, 794, 1091
BlnI CCTAGG 2 cut(s) 514, 1102
BlsI GCNGC 3 cut(s) 504, 795, 1092
Bme18I GGWCC 2 cut(s) 87, 179
BmgT120I GGNCC 2 cut(s) 87, 179
BmiI GGNNCC 4 cut(s) 88, 670, 835, 1132
BmsI GCATC 1 cut(s) 115
BpiI GAAGAC 2 cut(s) 334, 625
BpmI CTGGAG 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 806
BsaI GGTCTC 1 cut(s) 204
BsaJI CCNNGG 6 cut(s) 418, 514, 592, 709, 1006, 1102
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
BseDI CCNNGG 6 cut(s) 418, 514, 592, 709, 1006, 1102
BseGI GGATG 6 cut(s) 133, 188, 327, 332, 618, 623
BseMII CTCAG 5 cut(s) 351, 405, 642, 696, 993
BseXI GCAGC 3 cut(s) 514, 805, 1102
BshFI GGCC 8 cut(s) 324, 417, 519, 615, 708, 912, 1005, 1107
BshNI GGYRCC 2 cut(s) 833, 1130
BsmAI GTCTC 1 cut(s) 204
BsnI GGCC 8 cut(s) 324, 417, 519, 615, 708, 912, 1005, 1107
Bso31I GGTCTC 1 cut(s) 204
Bsp143I GATC 7 cut(s) 48, 274, 565, 657, 813, 862, 1155
BspACI CCGC 3 cut(s) 468, 759, 1056
BspANI GGCC 8 cut(s) 324, 417, 519, 615, 708, 912, 1005, 1107
BspCNI CTCAG 5 cut(s) 350, 404, 641, 695, 992
BspHI TCATGA 1 cut(s) 1184
BspLI GGNNCC 4 cut(s) 88, 670, 835, 1132
BspT107I GGYRCC 2 cut(s) 833, 1130
BspTNI GGTCTC 1 cut(s) 204
BssECI CCNNGG 6 cut(s) 418, 514, 592, 709, 1006, 1102
BssMI GATC 7 cut(s) 48, 274, 565, 657, 813, 862, 1155
BssT1I CCWWGG 6 cut(s) 418, 514, 592, 709, 1006, 1102
Bst4CI ACNGT 6 cut(s) 511, 533, 655, 952, 1099, 1121
BstDEI CTNAG 6 cut(s) 337, 391, 628, 682, 806, 979
BstF5I GGATG 6 cut(s) 133, 188, 327, 332, 618, 623
BstKTI GATC 7 cut(s) 51, 277, 568, 660, 816, 865, 1158
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 7 cut(s) 48, 274, 565, 657, 813, 862, 1155
BstV1I GCAGC 3 cut(s) 514, 805, 1102
BstV2I GAAGAC 2 cut(s) 334, 625
BstX2I RGATCY 1 cut(s) 565
BstXI CCANNNNNNTGG 1 cut(s) 195
BstYI RGATCY 1 cut(s) 565
BsuRI GGCC 8 cut(s) 324, 417, 519, 615, 708, 912, 1005, 1107
BtsCI GGATG 6 cut(s) 133, 188, 327, 332, 618, 623
BtsIMutI CAGTG 2 cut(s) 660, 957
CciI TCATGA 1 cut(s) 1184
Cfr13I GGNCC 2 cut(s) 87, 179
Csp6I GTAC 5 cut(s) 252, 543, 834, 840, 1131
CviAII CATG 5 cut(s) 263, 554, 811, 851, 1185
CviQI GTAC 5 cut(s) 252, 543, 834, 840, 1131
DdeI CTNAG 6 cut(s) 337, 391, 628, 682, 806, 979
DpnI GATC 7 cut(s) 50, 276, 567, 659, 815, 864, 1157
DpnII GATC 7 cut(s) 48, 274, 565, 657, 813, 862, 1155
EciI GGCGGA 3 cut(s) 483, 774, 1071
Eco130I CCWWGG 6 cut(s) 418, 514, 592, 709, 1006, 1102
Eco147I AGGCCT 5 cut(s) 417, 519, 708, 1005, 1107
Eco31I GGTCTC 1 cut(s) 204
Eco32I GATATC 2 cut(s) 369, 957
Eco47I GGWCC 2 cut(s) 87, 179
Eco57I CTGAAG 1 cut(s) 135
EcoRV GATATC 2 cut(s) 369, 957
EcoT14I CCWWGG 6 cut(s) 418, 514, 592, 709, 1006, 1102
ErhI CCWWGG 6 cut(s) 418, 514, 592, 709, 1006, 1102
FaeI CATG 5 cut(s) 266, 557, 814, 854, 1188
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FatI CATG 5 cut(s) 262, 553, 810, 850, 1184
Fnu4HI GCNGC 3 cut(s) 503, 794, 1091
FokI GGATG 6 cut(s) 120, 175, 314, 319, 605, 610
Fsp4HI GCNGC 3 cut(s) 503, 794, 1091
FspBI CTAG 8 cut(s) 449, 464, 515, 740, 755, 1037, 1052, 1103
GluI GCNGC 3 cut(s) 503, 794, 1091
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 8 cut(s) 324, 417, 519, 615, 708, 912, 1005, 1107
Hin1II CATG 5 cut(s) 266, 557, 814, 854, 1188
HincII GTYRAC 1 cut(s) 128
HindII GTYRAC 1 cut(s) 128
HinfI GANTC 2 cut(s) 298, 886
HphI GGTGA 2 cut(s) 284, 872
Hpy166II GTNNAC 5 cut(s) 128, 182, 354, 379, 942
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 2 cut(s) 113, 1185
Hpy8I GTNNAC 5 cut(s) 128, 182, 354, 379, 942
HpyAV CCTTC 1 cut(s) 107
HpyCH4III ACNGT 6 cut(s) 511, 533, 655, 952, 1099, 1121
HpyCH4V TGCA 1 cut(s) 207
HpyF3I CTNAG 6 cut(s) 337, 391, 628, 682, 806, 979
Hsp92II CATG 5 cut(s) 266, 557, 814, 854, 1188
KpnI GGTACC 2 cut(s) 837, 1134
Kzo9I GATC 7 cut(s) 48, 274, 565, 657, 813, 862, 1155
Lsp1109I GCAGC 3 cut(s) 514, 805, 1102
LweI GCATC 1 cut(s) 115
MaeI CTAG 8 cut(s) 449, 464, 515, 740, 755, 1037, 1052, 1103
MaeIII GTNAC 1 cut(s) 19
MalI GATC 7 cut(s) 50, 276, 567, 659, 815, 864, 1157
MboI GATC 7 cut(s) 48, 274, 565, 657, 813, 862, 1155
MboII GAAGA 5 cut(s) 101, 128, 334, 625, 922
MflI RGATCY 1 cut(s) 565
MmeI TCCRAC 2 cut(s) 114, 1167
MseI TTAA 6 cut(s) 309, 407, 600, 698, 897, 995
MslI CAYNNNNRTG 1 cut(s) 193
NdeII GATC 7 cut(s) 48, 274, 565, 657, 813, 862, 1155
NlaIII CATG 5 cut(s) 266, 557, 814, 854, 1188
NlaIV GGNNCC 4 cut(s) 88, 670, 835, 1132
PagI TCATGA 1 cut(s) 1184
PceI AGGCCT 5 cut(s) 417, 519, 708, 1005, 1107
PfeI GAWTC 2 cut(s) 298, 886
PkrI GCNGC 3 cut(s) 504, 795, 1092
PspN4I GGNNCC 4 cut(s) 88, 670, 835, 1132
PspPI GGNCC 2 cut(s) 87, 179
PsuI RGATCY 1 cut(s) 565
RsaI GTAC 5 cut(s) 253, 544, 835, 841, 1132
RsaNI GTAC 5 cut(s) 252, 543, 834, 840, 1131
RseI CAYNNNNRTG 1 cut(s) 193
SaqAI TTAA 6 cut(s) 309, 407, 600, 698, 897, 995
SatI GCNGC 3 cut(s) 503, 794, 1091
Sau3AI GATC 7 cut(s) 48, 274, 565, 657, 813, 862, 1155
Sau96I GGNCC 2 cut(s) 87, 179
SfaNI GCATC 1 cut(s) 115
SinI GGWCC 2 cut(s) 87, 179
SmiMI CAYNNNNRTG 1 cut(s) 193
SseBI AGGCCT 5 cut(s) 417, 519, 708, 1005, 1107
SsiI CCGC 3 cut(s) 468, 759, 1056
SspI AATATT 1 cut(s) 1162
SspMI CTAG 8 cut(s) 449, 464, 515, 740, 755, 1037, 1052, 1103
StuI AGGCCT 5 cut(s) 417, 519, 708, 1005, 1107
StyI CCWWGG 6 cut(s) 418, 514, 592, 709, 1006, 1102
TaaI ACNGT 6 cut(s) 511, 533, 655, 952, 1099, 1121
TaqI TCGA 1 cut(s) 1154
TatI WGTACW 1 cut(s) 839
TfiI GAWTC 2 cut(s) 298, 886
Tru1I TTAA 6 cut(s) 309, 407, 600, 698, 897, 995
Tru9I TTAA 6 cut(s) 309, 407, 600, 698, 897, 995
TscAI CASTG 2 cut(s) 660, 957
TseI GCWGC 3 cut(s) 502, 793, 1090
TspDTI ATGAA 1 cut(s) 1154
TspRI CASTG 2 cut(s) 660, 957
VpaK11BI GGWCC 2 cut(s) 87, 179
XapI RAATTY 3 cut(s) 283, 574, 871
XmaJI CCTAGG 2 cut(s) 514, 1102
XspI CTAG 8 cut(s) 449, 464, 515, 740, 755, 1037, 1052, 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.