RchiOBHm_Chr5g0017001

Wall-associated receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
11710947 .. 11711235
289 bp
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UTR
Exon/CDS
Intron
PRQ29733

Sequence Viewer

Length: 204 bp
ATGTCCCTATGCAAAAGGCTTGGCAATGTCGATAACTCTTGCTCCGGAGTTGGGTGTACAATCCCCAGCTTCAATAATCATTCGGGTATATGGAACTTTAACCCCTGCGGCTACGCCTTCATTGCAGAGCAAGGCCATTTCAATTTCTCCTGTGCGAGTTTTGATGAATTGAACAACACTGAACAGATTCCACTGGATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

67

Amino Acids

7.34

Weight (kDa)

4.57

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 44
AciI CCGC 1 cut(s) 108
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 3 cut(s) 73, 142, 172
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
Aor13HI TCCGGA 1 cut(s) 44
AoxI GGCC 1 cut(s) 133
Asp700I GAANNNNTTC 1 cut(s) 186
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 2 cut(s) 31, 120
BseAI TCCGGA 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 51
BseMI GCAATG 2 cut(s) 31, 120
BseNI ACTGG 1 cut(s) 198
BseYI CCCAGC 1 cut(s) 65
BshFI GGCC 1 cut(s) 135
BsiSI CCGG 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 51
BsnI GGCC 1 cut(s) 135
Bsp13I TCCGGA 1 cut(s) 44
Bsp1407I TGTACA 1 cut(s) 56
BspACI CCGC 1 cut(s) 108
BspANI GGCC 1 cut(s) 135
BspEI TCCGGA 1 cut(s) 44
BsrDI GCAATG 2 cut(s) 31, 120
BsrGI TGTACA 1 cut(s) 56
BsrI ACTGG 1 cut(s) 198
BstAUI TGTACA 1 cut(s) 56
BstMWI GCNNNNNNNGC 1 cut(s) 122
BsuRI GGCC 1 cut(s) 135
BtsIMutI CAGTG 2 cut(s) 177, 191
Csp6I GTAC 1 cut(s) 57
CviJI RGCY 4 cut(s) 19, 69, 111, 135
CviKI_1 RGCY 4 cut(s) 19, 69, 111, 135
CviQI GTAC 1 cut(s) 57
FaiI YATR 3 cut(s) 10, 89, 91
Fnu4HI GCNGC 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 109
GluI GCNGC 1 cut(s) 109
GsaI CCCAGC 1 cut(s) 69
HaeIII GGCC 1 cut(s) 135
HapII CCGG 1 cut(s) 45
HinfI GANTC 1 cut(s) 187
HpaII CCGG 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 57
Hpy188III TCNNGA 1 cut(s) 45
Hpy8I GTNNAC 1 cut(s) 57
HpyAV CCTTC 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 12, 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
Kpn2I TCCGGA 1 cut(s) 44
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 5 cut(s) 58, 79, 118, 163, 179
MluCI AATT 2 cut(s) 142, 167
MroI TCCGGA 1 cut(s) 44
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 1 cut(s) 99
MspI CCGG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 122
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 187
PkrI GCNGC 1 cut(s) 110
PspFI CCCAGC 1 cut(s) 65
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 1 cut(s) 109
SetI ASST 1 cut(s) 71
SgeI CNNG 9 cut(s) 32, 51, 57, 78, 96, 117, 143, 162, 168
Sse9I AATT 2 cut(s) 142, 167
SsiI CCGC 1 cut(s) 108
TaqI TCGA 1 cut(s) 30
TasI AATT 2 cut(s) 142, 167
TatI WGTACW 1 cut(s) 56
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 2 cut(s) 184, 198
TspDTI ATGAA 2 cut(s) 109, 180
TspRI CASTG 2 cut(s) 184, 198
XmnI GAANNNNTTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.