RchiOBHm_Chr5g0022801

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
16874990 .. 16875279
290 bp
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UTR
Exon/CDS
Intron
PRQ30272

Sequence Viewer

Length: 189 bp
ATGGCTCATGACTGGGTTCCTCCCTTCCAGCTTGATTCACTCGACATTGCCAACTGCAGAGTAGGTCCTGCCTTTGGGGTATGGCTTCAGTCTCAAACTGAATTAAAGCGTCTCAGGCTTAGTAATACTTCAATCTCAGATTTCATACCAGAGGAATGGTTCTTGAAGATATCTTTCCAGCTCACATAA

Protein Analysis

62

Amino Acids

7.19

Weight (kDa)

5.0

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 2 cut(s) 132, 166
AluBI AGCT 2 cut(s) 31, 181
AluI AGCT 2 cut(s) 31, 181
Alw26I GTCTC 2 cut(s) 96, 116
AspS9I GGNCC 1 cut(s) 65
AvaII GGWCC 1 cut(s) 65
BcoDI GTCTC 2 cut(s) 96, 116
BfmI CTRYAG 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 22
BmuI ACTGGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 17
Bse3DI GCAATG 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 127, 150
BseNI ACTGG 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 2 cut(s) 96, 116
BsmBI CGTCTC 1 cut(s) 116
BspCNI CTCAG 2 cut(s) 126, 149
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 1 cut(s) 17
BstDEI CTNAG 3 cut(s) 113, 119, 136
BstMAI GTCTC 2 cut(s) 96, 116
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 55
BstXI CCANNNNNNTGG 1 cut(s) 156
CciI TCATGA 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 65
CseI GACGC 1 cut(s) 98
CviAII CATG 1 cut(s) 8
CviJI RGCY 5 cut(s) 5, 31, 85, 118, 181
CviKI_1 RGCY 5 cut(s) 5, 31, 85, 118, 181
DdeI CTNAG 3 cut(s) 113, 119, 136
Eco32I GATATC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 65
EcoRV GATATC 1 cut(s) 171
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 1 cut(s) 11
FaiI YATR 4 cut(s) 9, 82, 146, 187
FatI CATG 1 cut(s) 7
HgaI GACGC 1 cut(s) 98
Hin1II CATG 1 cut(s) 11
HinfI GANTC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 2 cut(s) 8, 163
HpyAV CCTTC 1 cut(s) 34
HpyCH4V TGCA 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpyF3I CTNAG 3 cut(s) 113, 119, 136
Hsp92II CATG 1 cut(s) 11
LpnPI CCDG 4 cut(s) 41, 81, 100, 162
MboII GAAGA 1 cut(s) 178
MluCI AATT 1 cut(s) 101
MnlI CCTC 2 cut(s) 30, 145
MseI TTAA 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 115
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 1 cut(s) 18
PagI TCATGA 1 cut(s) 7
PfeI GAWTC 1 cut(s) 35
PpuMI RGGWCCY 1 cut(s) 65
Psp5II RGGWCCY 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 65
PspPPI RGGWCCY 1 cut(s) 65
PstI CTGCAG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 104
Sau96I GGNCC 1 cut(s) 65
SetI ASST 3 cut(s) 33, 67, 183
SfcI CTRYAG 1 cut(s) 55
SgeI CNNG 9 cut(s) 20, 25, 40, 44, 53, 80, 127, 161, 175
SinI GGWCC 1 cut(s) 65
Sse9I AATT 1 cut(s) 101
TaqI TCGA 1 cut(s) 42
TasI AATT 1 cut(s) 101
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.