RchiOBHm_Chr5g0024941

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
18963658 .. 18965278
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30463

Sequence Viewer

Length: 1008 bp
ATGTTTCAATTGTTAGCCTCTACAGCACATAAGTGGATATGGATTGGTGCTGCTGGTCTATTGGTAATGGTGCTTTGCATCCTCTGCTATCTATTAAGAAGAGATCCTGCAACTCCAGGTAACTTTTCAAACATAATTGATTTTAGAGATTTGACAAATGAAATCTTTTTGTTTAATATATTACTCGGATTAGGGCCTCCAAATGATAGATTTATGGGAGATGATTTAAAAGTATTTAGCTATGAATCTGTCATGGCTGCTACAGACAATTTCTCTGGAGAAAACAAGCTCGGAGAAGGGGGCTTTGGACCTGTTTATAAGGGATCAATGCCGACAGGTCAAGAAATAGCTGTAAAGACGCTTTCAAGTGGTTCGGTGCAAGGAGAAGTAGAGTTCAAGAATGAACTGATACTCATATCTGAACTCCAACATATTAATCTTGTTCAGCTTTTTGGATATTGCATTCATGGAATCATGGTGAAGAGAGGATATTCAACCAGCCGCATGCTTCTAGATTGGAAGAAGCGTTTCAATATAATTGAAGGAATAGCCCAAGGATTGCTCTACTTGCACAAATACTCAATATCTAAAGTAATTCACAGAGATCTTAAAGCTAGTAACATACTACTTGATGAAAATATGTACCCCAAAATTTCTGATTTTGTGGTTACATGTCTTCTAGCTGAGTATGCTATGCAGGGATTTTTTTCTGAAAAATCAGATGTCTTTAGTTTTGGAGTGTTGATGCTCGAAATCATAAGTGGTAGGAAAAACAACAGCTTCCACACTGCTCATCGTGCGCTCAATTTAGTAGGATATGATCCAGGACTTCGGCCAACCATGTCAGATGCCATATCTATGCTGACAATTGAAAGCTTGCCTTTACCTATACCAACAAGACCAGCATCTTTTCCAGTAAGGAATTCGGCTGGAGTAAATATAAGAGGAAATGAATCTGAAAAGATTACAGAAAATGGCTTGTCCGACTCCCTTATTCTAGGACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

335

Amino Acids

37.23

Weight (kDa)

6.39

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 94 - 263 6.1e-24 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 94 - 229 7.3e-19 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
AciI CCGC 1 cut(s) 502
AclWI GGATC 3 cut(s) 98, 331, 815
AcoI YGGCCR 1 cut(s) 833
AcsI RAATTY 2 cut(s) 651, 922
AfaI GTAC 1 cut(s) 644
AflIII ACRYGT 1 cut(s) 671
AgsI TTSAA 8 cut(s) 8, 129, 366, 397, 495, 532, 542, 872
AjnI CCWGG 2 cut(s) 115, 823
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AleI CACNNNNGTG 1 cut(s) 31
AluBI AGCT 8 cut(s) 240, 289, 350, 448, 614, 683, 780, 876
AluI AGCT 8 cut(s) 240, 289, 350, 448, 614, 683, 780, 876
AlwI GGATC 3 cut(s) 98, 331, 815
AoxI GGCC 2 cut(s) 194, 833
ApeKI GCWGC 2 cut(s) 50, 257
ApoI RAATTY 2 cut(s) 651, 922
AseI ATTAAT 1 cut(s) 435
Asp700I GAANNNNTTC 1 cut(s) 527
AspLEI GCGC 1 cut(s) 802
AspS9I GGNCC 2 cut(s) 194, 308
AsuHPI GGTGA 1 cut(s) 490
AvaII GGWCC 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 668
BbvI GCAGC 2 cut(s) 37, 244
BciT130I CCWGG 2 cut(s) 117, 825
BfaI CTAG 4 cut(s) 512, 615, 680, 998
BfmI CTRYAG 2 cut(s) 21, 261
BglII AGATCT 1 cut(s) 604
BisI GCNGC 3 cut(s) 51, 258, 502
BlsI GCNGC 3 cut(s) 52, 259, 503
Bme1390I CCNGG 2 cut(s) 117, 825
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 194, 308
BmrFI CCNGG 2 cut(s) 117, 825
BmsI GCATC 4 cut(s) 87, 735, 838, 914
BpiI GAAGAC 1 cut(s) 668
BpmI CTGGAG 3 cut(s) 99, 297, 951
BsaJI CCNNGG 1 cut(s) 553
Bse1I ACTGG 1 cut(s) 914
BseBI CCWGG 2 cut(s) 117, 825
BseDI CCNNGG 1 cut(s) 553
BseGI GGATG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 675
BseNI ACTGG 1 cut(s) 914
BseXI GCAGC 2 cut(s) 37, 244
BshFI GGCC 2 cut(s) 196, 835
BsmI GAATGC 1 cut(s) 462
BsnI GGCC 2 cut(s) 196, 835
Bsp143I GATC 4 cut(s) 103, 323, 604, 820
BspACI CCGC 1 cut(s) 502
BspANI GGCC 2 cut(s) 196, 835
BspCNI CTCAG 1 cut(s) 676
BspPI GGATC 3 cut(s) 98, 331, 815
BsrI ACTGG 1 cut(s) 914
BssECI CCNNGG 1 cut(s) 553
BssMI GATC 4 cut(s) 103, 323, 604, 820
BssT1I CCWWGG 1 cut(s) 553
Bst2UI CCWGG 2 cut(s) 117, 825
Bst4CI ACNGT 1 cut(s) 1005
Bst6I CTCTTC 2 cut(s) 94, 476
BstAPI GCANNNNNTGC 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 506, 878
BstDEI CTNAG 1 cut(s) 684
BstF5I GGATG 1 cut(s) 78
BstHHI GCGC 1 cut(s) 802
BstKTI GATC 4 cut(s) 106, 326, 607, 823
BstMBI GATC 4 cut(s) 103, 323, 604, 820
BstMWI GCNNNNNNNGC 5 cut(s) 23, 84, 568, 689, 797
BstNI CCWGG 2 cut(s) 117, 825
BstNSI RCATGY 2 cut(s) 508, 675
BstSCI CCNGG 2 cut(s) 115, 823
BstSFI CTRYAG 2 cut(s) 21, 261
BstV1I GCAGC 2 cut(s) 37, 244
BstV2I GAAGAC 1 cut(s) 668
BstX2I RGATCY 2 cut(s) 103, 604
BstYI RGATCY 2 cut(s) 103, 604
BsuRI GGCC 2 cut(s) 196, 835
BtsCI GGATG 1 cut(s) 78
BtsI GCAGTG 1 cut(s) 786
BtsIMutI CAGTG 1 cut(s) 786
Cac8I GCNNGC 2 cut(s) 506, 878
CfoI GCGC 1 cut(s) 802
Cfr13I GGNCC 2 cut(s) 194, 308
CseI GACGC 1 cut(s) 367
Csp6I GTAC 1 cut(s) 643
CviAII CATG 6 cut(s) 253, 467, 475, 505, 672, 841
CviQI GTAC 1 cut(s) 643
DdeI CTNAG 1 cut(s) 684
DpnI GATC 4 cut(s) 105, 325, 606, 822
DpnII GATC 4 cut(s) 103, 323, 604, 820
DraI TTTAAA 1 cut(s) 228
EaeI YGGCCR 1 cut(s) 833
Eam1104I CTCTTC 2 cut(s) 94, 476
EarI CTCTTC 2 cut(s) 94, 476
Eco130I CCWWGG 1 cut(s) 553
Eco47I GGWCC 1 cut(s) 308
EcoO109I RGGNCCY 1 cut(s) 194
EcoRI GAATTC 1 cut(s) 922
EcoRII CCWGG 2 cut(s) 115, 823
EcoT14I CCWWGG 1 cut(s) 553
ErhI CCWWGG 1 cut(s) 553
FaeI CATG 6 cut(s) 256, 470, 478, 508, 675, 844
FalI AAGNNNNNCTT 2 cut(s) 865, 897
FatI CATG 6 cut(s) 252, 466, 474, 504, 671, 840
Fnu4HI GCNGC 3 cut(s) 51, 258, 502
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 3 cut(s) 51, 258, 502
FspBI CTAG 4 cut(s) 512, 615, 680, 998
GlaI GCGC 1 cut(s) 801
GluI GCNGC 3 cut(s) 51, 258, 502
GsuI CTGGAG 3 cut(s) 99, 297, 951
HaeIII GGCC 2 cut(s) 196, 835
HgaI GACGC 1 cut(s) 367
HhaI GCGC 1 cut(s) 802
Hin1II CATG 6 cut(s) 256, 470, 478, 508, 675, 844
Hin6I GCGC 1 cut(s) 800
HinP1I GCGC 1 cut(s) 800
HindIII AAGCTT 1 cut(s) 874
HinfI GANTC 4 cut(s) 245, 471, 953, 986
HphI GGTGA 1 cut(s) 490
Hpy188I TCNGA 9 cut(s) 188, 293, 421, 658, 712, 721, 847, 958, 985
Hpy188III TCNNGA 4 cut(s) 276, 341, 397, 512
HpyAV CCTTC 2 cut(s) 290, 536
HpyCH4III ACNGT 1 cut(s) 1005
HpyCH4V TGCA 6 cut(s) 78, 110, 379, 462, 571, 697
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 84, 568, 689, 797
HpyF3I CTNAG 1 cut(s) 684
Hsp92II CATG 6 cut(s) 256, 470, 478, 508, 675, 844
HspAI GCGC 1 cut(s) 800
Kzo9I GATC 4 cut(s) 103, 323, 604, 820
Lsp1109I GCAGC 2 cut(s) 37, 244
LweI GCATC 4 cut(s) 87, 735, 838, 914
MaeI CTAG 4 cut(s) 512, 615, 680, 998
MaeIII GTNAC 3 cut(s) 119, 617, 667
MalI GATC 4 cut(s) 105, 325, 606, 822
MboI GATC 4 cut(s) 103, 323, 604, 820
MboII GAAGA 4 cut(s) 111, 493, 532, 668
MfeI CAATTG 2 cut(s) 8, 867
MflI RGATCY 2 cut(s) 103, 604
MluCI AATT 9 cut(s) 8, 135, 268, 537, 594, 651, 805, 867, 922
MlyI GAGTC 1 cut(s) 980
MmeI TCCRAC 2 cut(s) 451, 1008
MnlI CCTC 5 cut(s) 28, 92, 207, 479, 938
MroXI GAANNNNTTC 1 cut(s) 527
MseI TTAA 5 cut(s) 95, 174, 227, 435, 609
MslI CAYNNNNRTG 2 cut(s) 31, 857
MspR9I CCNGG 2 cut(s) 117, 825
MunI CAATTG 2 cut(s) 8, 867
Mva1269I GAATGC 1 cut(s) 462
MvaI CCWGG 2 cut(s) 117, 825
MwoI GCNNNNNNNGC 5 cut(s) 23, 84, 568, 689, 797
NdeII GATC 4 cut(s) 103, 323, 604, 820
NlaIII CATG 6 cut(s) 256, 470, 478, 508, 675, 844
NspI RCATGY 2 cut(s) 508, 675
OliI CACNNNNGTG 1 cut(s) 31
PaeI GCATGC 1 cut(s) 508
PciI ACATGT 1 cut(s) 671
PctI GAATGC 1 cut(s) 462
PdmI GAANNNNTTC 1 cut(s) 527
PfeI GAWTC 3 cut(s) 245, 471, 953
PfoI TCCNGGA 1 cut(s) 823
PkrI GCNGC 3 cut(s) 52, 259, 503
PleI GAGTC 1 cut(s) 980
PpsI GAGTC 1 cut(s) 980
PscI ACATGT 1 cut(s) 671
PshBI ATTAAT 1 cut(s) 435
PsiI TTATAA 1 cut(s) 318
Psp6I CCWGG 2 cut(s) 115, 823
PspGI CCWGG 2 cut(s) 115, 823
PspPI GGNCC 2 cut(s) 194, 308
PsuI RGATCY 2 cut(s) 103, 604
RsaI GTAC 1 cut(s) 644
RsaNI GTAC 1 cut(s) 643
RseI CAYNNNNRTG 2 cut(s) 31, 857
SaqAI TTAA 5 cut(s) 95, 174, 227, 435, 609
SatI GCNGC 3 cut(s) 51, 258, 502
Sau3AI GATC 4 cut(s) 103, 323, 604, 820
Sau96I GGNCC 2 cut(s) 194, 308
SchI GAGTC 1 cut(s) 980
ScrFI CCNGG 2 cut(s) 117, 825
SfaNI GCATC 4 cut(s) 87, 735, 838, 914
SfcI CTRYAG 2 cut(s) 21, 261
SinI GGWCC 1 cut(s) 308
SmiMI CAYNNNNRTG 2 cut(s) 31, 857
SphI GCATGC 1 cut(s) 508
Sse9I AATT 9 cut(s) 8, 135, 268, 537, 594, 651, 805, 867, 922
SsiI CCGC 1 cut(s) 502
SspMI CTAG 4 cut(s) 512, 615, 680, 998
StyD4I CCNGG 2 cut(s) 115, 823
StyI CCWWGG 1 cut(s) 553
TaaI ACNGT 1 cut(s) 1005
TaqI TCGA 1 cut(s) 750
TasI AATT 9 cut(s) 8, 135, 268, 537, 594, 651, 805, 867, 922
TauI GCSGC 1 cut(s) 504
TfiI GAWTC 3 cut(s) 245, 471, 953
Tru1I TTAA 5 cut(s) 95, 174, 227, 435, 609
Tru9I TTAA 5 cut(s) 95, 174, 227, 435, 609
TscAI CASTG 1 cut(s) 793
TseI GCWGC 2 cut(s) 50, 257
TspDTI ATGAA 6 cut(s) 174, 258, 417, 455, 648, 966
TspRI CASTG 1 cut(s) 793
VpaK11BI GGWCC 1 cut(s) 308
VspI ATTAAT 1 cut(s) 435
XapI RAATTY 2 cut(s) 651, 922
XbaI TCTAGA 1 cut(s) 511
XceI RCATGY 2 cut(s) 508, 675
XmnI GAANNNNTTC 1 cut(s) 527
XspI CTAG 4 cut(s) 512, 615, 680, 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.