RchiOBHm_Chr5g0032471

L-type lectin-domain containing receptor kinase IX.1-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
26136213 .. 26136569
357 bp
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UTR
Exon/CDS
Intron
PRQ31165

Sequence Viewer

Length: 357 bp
ATGGCCGTCAAAAACACATTCCGATTGTCCCTAAAGCAGTTTCAATTGCTTCTTCTTCTCTTATTACTGTTGCCCTTCTCTGCAACTCCATTGACCTTCAATTTCCCCAGCTTTCCCCTTAATGTTACCGCTAATATATCTATGGAGGGAGATGCTTTGCCCGATGGGTCCCTCCGCCTCACCAAAAGTGCCGTCGACGTTCAAAAGAACCAAGCGTCGGCCGAGCCACCTATCGCCAACCCTTCCTCCTCCGCCAAAACTCCACCGGAAAACTCGCTGATTTTACATCAAGTTTCACGTTCGCCATTAACTCCGGCAGCAGCCCCAAATTCGGTGATGGGCTGGCCTTCTTCTTAG

Protein Analysis

118

Amino Acids

12.58

Weight (kDa)

9.4

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 195
AciI CCGC 3 cut(s) 129, 175, 252
AcoI YGGCCR 2 cut(s) 3, 219
AcsI RAATTY 1 cut(s) 328
AfiI CCNNNNNNNGG 2 cut(s) 217, 331
AgsI TTSAA 3 cut(s) 44, 100, 203
AluBI AGCT 1 cut(s) 111
AluI AGCT 1 cut(s) 111
AoxI GGCC 3 cut(s) 3, 219, 344
ApeKI GCWGC 2 cut(s) 317, 320
ApoI RAATTY 1 cut(s) 328
ArsI GACNNNNNNTTYG 2 cut(s) 177, 209
AspS9I GGNCC 1 cut(s) 168
AsuHPI GGTGA 2 cut(s) 172, 346
AvaII GGWCC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 329, 332
BccI CCATC 2 cut(s) 158, 331
BceAI ACGGC 1 cut(s) 176
BisI GCNGC 2 cut(s) 318, 321
BlsI GCNGC 2 cut(s) 319, 322
Bme18I GGWCC 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 2 cut(s) 169, 170
BmsI GCATC 1 cut(s) 142
BsaWI WCCGGW 1 cut(s) 265
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 331
BseLI CCNNNNNNNGG 2 cut(s) 217, 331
BseRI GAGGAG 1 cut(s) 238
BseX3I CGGCCG 1 cut(s) 219
BseXI GCAGC 2 cut(s) 329, 332
BseYI CCCAGC 1 cut(s) 107
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 3 cut(s) 5, 221, 346
BsiEI CGRYCG 1 cut(s) 222
BsiSI CCGG 2 cut(s) 266, 314
BslFI GGGAC 2 cut(s) 13, 154
BslI CCNNNNNNNGG 2 cut(s) 217, 331
BsmFI GGGAC 2 cut(s) 13, 154
BsnI GGCC 3 cut(s) 5, 221, 346
BspACI CCGC 3 cut(s) 129, 175, 252
BspANI GGCC 3 cut(s) 5, 221, 346
BspLI GGNNCC 2 cut(s) 169, 170
Bst4CI ACNGT 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 344
BstDEI CTNAG 1 cut(s) 354
BstMCI CGRYCG 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 329, 332
BstZI CGGCCG 1 cut(s) 219
BsuRI GGCC 3 cut(s) 5, 221, 346
Cac8I GCNNGC 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 168
CseI GACGC 1 cut(s) 204
CviJI RGCY 7 cut(s) 5, 111, 221, 226, 323, 342, 346
CviKI_1 RGCY 7 cut(s) 5, 111, 221, 226, 323, 342, 346
DdeI CTNAG 1 cut(s) 354
EaeI YGGCCR 2 cut(s) 3, 219
EagI CGGCCG 1 cut(s) 219
EciI GGCGGA 2 cut(s) 164, 241
EclXI CGGCCG 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 168
Eco52I CGGCCG 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 168
FaiI YATR 2 cut(s) 137, 143
FaqI GGGAC 2 cut(s) 13, 154
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 318, 321
Fsp4HI GCNGC 2 cut(s) 318, 321
GluI GCNGC 2 cut(s) 318, 321
GsaI CCCAGC 1 cut(s) 111
HaeIII GGCC 3 cut(s) 5, 221, 346
HapII CCGG 2 cut(s) 266, 314
HgaI GACGC 1 cut(s) 204
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HpaII CCGG 2 cut(s) 266, 314
HphI GGTGA 2 cut(s) 172, 346
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 23
Hpy8I GTNNAC 1 cut(s) 196
Hpy99I CGWCG 3 cut(s) 197, 200, 220
HpyAV CCTTC 4 cut(s) 85, 106, 252, 357
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4IV ACGT 2 cut(s) 198, 298
HpyCH4V TGCA 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 354
HpySE526I ACGT 2 cut(s) 198, 298
KflI GGGWCCC 1 cut(s) 168
LpnPI CCDG 4 cut(s) 121, 279, 327, 328
Lsp1109I GCAGC 2 cut(s) 329, 332
LweI GCATC 1 cut(s) 142
MaeII ACGT 2 cut(s) 198, 298
MaeIII GTNAC 1 cut(s) 124
MboII GAAGA 3 cut(s) 44, 47, 342
MfeI CAATTG 1 cut(s) 44
MluCI AATT 3 cut(s) 44, 100, 328
MnlI CCTC 5 cut(s) 139, 182, 188, 256, 259
MseI TTAA 2 cut(s) 120, 308
MspI CCGG 2 cut(s) 266, 314
MunI CAATTG 1 cut(s) 44
NlaIV GGNNCC 2 cut(s) 169, 170
NmeAIII GCCGAG 1 cut(s) 247
PkrI GCNGC 2 cut(s) 319, 322
PpuMI RGGWCCY 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 168
PspFI CCCAGC 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 169, 170
PspPI GGNCC 1 cut(s) 168
PspPPI RGGWCCY 1 cut(s) 168
SalI GTCGAC 1 cut(s) 194
SaqAI TTAA 2 cut(s) 120, 308
SatI GCNGC 2 cut(s) 318, 321
Sau96I GGNCC 1 cut(s) 168
SetI ASST 5 cut(s) 98, 113, 201, 232, 301
SfaNI GCATC 1 cut(s) 142
SgeI CNNG 9 cut(s) 120, 173, 224, 235, 278, 286, 302, 309, 326
SgrDI CGTCGACG 1 cut(s) 194
SinI GGWCC 1 cut(s) 168
Sse9I AATT 3 cut(s) 44, 100, 328
SsiI CCGC 3 cut(s) 129, 175, 252
TaaI ACNGT 1 cut(s) 69
TaiI ACGT 2 cut(s) 201, 301
TaqI TCGA 1 cut(s) 195
TasI AATT 3 cut(s) 44, 100, 328
Tru1I TTAA 2 cut(s) 120, 308
Tru9I TTAA 2 cut(s) 120, 308
TseI GCWGC 2 cut(s) 317, 320
VpaK11BI GGWCC 1 cut(s) 168
XapI RAATTY 1 cut(s) 328
XmiI GTMKAC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.