RchiOBHm_Chr5g0036021
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
30140719 .. 30141225
507 bp
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UTR
Exon/CDS
Intron
PRQ31484

Sequence Viewer

Length: 201 bp
ATGATCAGCCTAGCAGTTCATCACAACCTTCTCCGGCTTTATGGGTTTTGCATCACTCCAACAGAAAGACTTCTAGTTTACCCATACATGTCCAATGGCAGTGTGGCTTCTCGTGTCAAAGGGAAACCAGTGTTGGATTGGGGAACTAGGAAACGGATTGCCTTTGGAGCTGCAAGAGGATTGTTATACCTTCATGAGTAG

Protein Analysis

66

Amino Acids

7.46

Weight (kDa)

10.12

Isoelectric Point (pI)

30.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 5 - 66 2.5e-06 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 5 - 66 9.8e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 87
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 170
Asp700I GAANNNNTTC 1 cut(s) 69
BauI CACGAG 1 cut(s) 111
BbvI GCAGC 1 cut(s) 157
BclI TGATCA 1 cut(s) 3
BfaI CTAG 3 cut(s) 11, 74, 147
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BmsI GCATC 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 157
BsiSI CCGG 1 cut(s) 34
Bsp143I GATC 1 cut(s) 3
BspHI TCATGA 1 cut(s) 193
BsrI ACTGG 1 cut(s) 128
BssMI GATC 1 cut(s) 3
BssSI CACGAG 1 cut(s) 111
Bst2BI CACGAG 1 cut(s) 111
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 157
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 2 cut(s) 106, 135
CciI TCATGA 1 cut(s) 193
CviAII CATG 2 cut(s) 88, 194
CviJI RGCY 4 cut(s) 9, 37, 107, 170
CviKI_1 RGCY 4 cut(s) 9, 37, 107, 170
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
FaeI CATG 2 cut(s) 91, 197
FaiI YATR 5 cut(s) 42, 85, 89, 187, 195
FatI CATG 2 cut(s) 87, 193
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 3 cut(s) 11, 74, 147
GluI GCNGC 1 cut(s) 171
HapII CCGG 1 cut(s) 34
Hin1II CATG 2 cut(s) 91, 197
HpaII CCGG 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 2 cut(s) 38, 200
HpyCH4V TGCA 2 cut(s) 51, 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
Hsp92II CATG 2 cut(s) 91, 197
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 2 cut(s) 47, 141
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 1 cut(s) 60
MaeI CTAG 3 cut(s) 11, 74, 147
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MmeI TCCRAC 2 cut(s) 83, 114
MnlI CCTC 1 cut(s) 170
MroXI GAANNNNTTC 1 cut(s) 69
MspI CCGG 1 cut(s) 34
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 91, 197
NspI RCATGY 1 cut(s) 91
PagI TCATGA 1 cut(s) 193
PciI ACATGT 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 69
PkrI GCNGC 1 cut(s) 172
PscI ACATGT 1 cut(s) 87
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 1 cut(s) 3
SetI ASST 3 cut(s) 30, 172, 192
SfaNI GCATC 1 cut(s) 60
SgeI CNNG 9 cut(s) 23, 46, 86, 100, 123, 125, 140, 159, 186
SspMI CTAG 3 cut(s) 11, 74, 147
TscAI CASTG 2 cut(s) 106, 135
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 2 cut(s) 8, 182
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 2 cut(s) 106, 135
XceI RCATGY 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 2 cut(s) 100, 135
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 3 cut(s) 11, 74, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.