RchiOBHm_Chr5g0038811

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
33599402 .. 33599763
362 bp
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UTR
Exon/CDS
Intron
PRQ31741

Sequence Viewer

Length: 237 bp
ATGGTTGCAAATGTTTCTGATTTTGGCATTGCAAAACTCTTAGGCGGAAGAGATTCTATGAGTCAAACCATGCGACAATTGGATATATGGCTCCAGTGTGGAATGGAAGGAATGGTTACTACAAGAGGGGATGTGTACAGTTTTGGTATTGTGCTTCTGGAAACATTCACAAAAAGGAAGCCAACAGATGAGATGTTTGACGGGGAAATGAGTTTAAAGAGAGGGGTGGCAAATTAA

Protein Analysis

78

Amino Acids

8.68

Weight (kDa)

5.2

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 66 2.3e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 45
AfaI GTAC 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 94
Bse3DI GCAATG 1 cut(s) 27
BseGI GGATG 1 cut(s) 136
BseMI GCAATG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 94
Bsp1407I TGTACA 1 cut(s) 135
BspACI CCGC 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 27
BsrGI TGTACA 1 cut(s) 135
BsrI ACTGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 40
BstF5I GGATG 1 cut(s) 136
BtsCI GGATG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 101
Csp6I GTAC 1 cut(s) 136
CviAII CATG 1 cut(s) 70
CviJI RGCY 2 cut(s) 91, 181
CviKI_1 RGCY 2 cut(s) 91, 181
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 40
DraI TTTAAA 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
EciI GGCGGA 1 cut(s) 60
FaeI CATG 1 cut(s) 73
FaiI YATR 4 cut(s) 59, 71, 86, 88
FatI CATG 1 cut(s) 69
FokI GGATG 1 cut(s) 143
GsuI CTGGAG 1 cut(s) 77
Hin1II CATG 1 cut(s) 73
HinfI GANTC 2 cut(s) 53, 61
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 2 cut(s) 8, 32
HpyF3I CTNAG 1 cut(s) 40
Hsp92II CATG 1 cut(s) 73
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 2 cut(s) 107, 143
MaeIII GTNAC 1 cut(s) 115
MboII GAAGA 1 cut(s) 60
MfeI CAATTG 1 cut(s) 77
MluCI AATT 2 cut(s) 77, 232
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 2 cut(s) 119, 215
MroXI GAANNNNTTC 1 cut(s) 52
MseI TTAA 2 cut(s) 215, 235
MunI CAATTG 1 cut(s) 77
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 52
PfeI GAWTC 1 cut(s) 53
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 92
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SaqAI TTAA 2 cut(s) 215, 235
SchI GAGTC 1 cut(s) 70
SgeI CNNG 5 cut(s) 82, 106, 135, 170, 214
Sse9I AATT 2 cut(s) 77, 232
SsiI CCGC 1 cut(s) 45
TaaI ACNGT 1 cut(s) 140
TasI AATT 2 cut(s) 77, 232
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 2 cut(s) 215, 235
Tru9I TTAA 2 cut(s) 215, 235
TscAI CASTG 1 cut(s) 101
TspRI CASTG 1 cut(s) 101
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XmnI GAANNNNTTC 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.