RchiOBHm_Chr5g0040421

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
35122280 .. 35122693
414 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31892

Sequence Viewer

Length: 414 bp
ATGCTTCTTTCTTTTAGAGATTTTTTGTTGAAATTGGCTAAAATCTCGTCCTACATCAGACTTTGGTTAATTCTGACATTAATTTTGGCAGGTACTATACCAGATGAGATTGGTGATCTTCCAAAATTGGAGCTTTTAGCACTCCATTTAAACAATCTCAATGGCCTCATCCCATCCAGAGTCTTCAATATGTCCACCATACAAAGTCTCTCACTTGCTCTTAATCACCTCTCGGGTAGTCTCCCTGCAAACATCGGGCTCGGGATTCCAAACTTAAAAGAATTTCTTGCAGCAGAGAATGAACTTAGCAGACTAATCCCCAACTTCATATCTAATGCTTCCAAGATCACAATGCTAAACTTGGCCAGTAACTCATTTTCAGGGTTTATACCTGGCACAGTTTGTGCCTTATAA

Protein Analysis

137

Amino Acids

14.87

Weight (kDa)

7.93

Isoelectric Point (pI)

26.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 412
Acc36I ACCTGC 1 cut(s) 80
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 1 cut(s) 281
AfaI GTAC 1 cut(s) 94
AgsI TTSAA 2 cut(s) 31, 187
AjnI CCWGG 1 cut(s) 391
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw26I GTCTC 2 cut(s) 212, 245
Ama87I CYCGRG 2 cut(s) 232, 260
AoxI GGCC 2 cut(s) 163, 363
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 281
ArsI GACNNNNNNTTYG 2 cut(s) 67, 99
AseI ATTAAT 1 cut(s) 80
AsuHPI GGTGA 2 cut(s) 125, 218
AvaI CYCGRG 2 cut(s) 232, 260
BalI TGGCCA 1 cut(s) 365
BanII GRGCYC 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 302
BccI CCATC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 393
BcoDI GTCTC 2 cut(s) 212, 245
BfuAI ACCTGC 1 cut(s) 80
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 393
BmeT110I CYCGRG 2 cut(s) 232, 260
BmrFI CCNGG 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 366
BseBI CCWGG 1 cut(s) 393
BseGI GGATG 2 cut(s) 168, 173
BseNI ACTGG 1 cut(s) 366
BseXI GCAGC 1 cut(s) 302
BshFI GGCC 2 cut(s) 165, 365
BsiHKCI CYCGRG 2 cut(s) 232, 260
BsmAI GTCTC 2 cut(s) 212, 245
BsnI GGCC 2 cut(s) 165, 365
BsoBI CYCGRG 2 cut(s) 232, 260
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 2 cut(s) 115, 345
BspANI GGCC 2 cut(s) 165, 365
BspMI ACCTGC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 366
BssMI GATC 2 cut(s) 115, 345
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 1 cut(s) 400
BstDEI CTNAG 1 cut(s) 305
BstF5I GGATG 2 cut(s) 168, 173
BstKTI GATC 2 cut(s) 118, 348
BstMAI GTCTC 2 cut(s) 212, 245
BstMBI GATC 2 cut(s) 115, 345
BstNI CCWGG 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 391
BstV1I GCAGC 1 cut(s) 302
BstV2I GAAGAC 1 cut(s) 175
BsuRI GGCC 2 cut(s) 165, 365
BtsCI GGATG 2 cut(s) 168, 173
BveI ACCTGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 93
CviJI RGCY 5 cut(s) 38, 133, 165, 259, 365
CviKI_1 RGCY 5 cut(s) 38, 133, 165, 259, 365
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 1 cut(s) 305
DpnI GATC 2 cut(s) 117, 347
DpnII GATC 2 cut(s) 115, 345
DraI TTTAAA 1 cut(s) 150
EaeI YGGCCR 1 cut(s) 363
Eco24I GRGCYC 1 cut(s) 261
Eco88I CYCGRG 2 cut(s) 232, 260
EcoRII CCWGG 1 cut(s) 391
EcoT38I GRGCYC 1 cut(s) 261
FaiI YATR 6 cut(s) 98, 191, 200, 329, 389, 412
FalI AAGNNNNNCTT 2 cut(s) 270, 302
Fnu4HI GCNGC 1 cut(s) 291
FokI GGATG 2 cut(s) 155, 160
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 291
GluI GCNGC 1 cut(s) 291
HaeIII GGCC 2 cut(s) 165, 365
HinfI GANTC 2 cut(s) 180, 265
HphI GGTGA 2 cut(s) 125, 218
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 2 cut(s) 59, 75
Hpy188III TCNNGA 2 cut(s) 177, 262
Hpy8I GTNNAC 1 cut(s) 195
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4V TGCA 2 cut(s) 248, 290
HpyF3I CTNAG 1 cut(s) 305
Kzo9I GATC 2 cut(s) 115, 345
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 8 cut(s) 75, 114, 190, 258, 366, 378, 379, 405
Lsp1109I GCAGC 1 cut(s) 302
MaeIII GTNAC 1 cut(s) 368
MalI GATC 2 cut(s) 117, 347
MboI GATC 2 cut(s) 115, 345
MboII GAAGA 2 cut(s) 110, 175
MhlI GDGCHC 1 cut(s) 261
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 5 cut(s) 32, 69, 81, 125, 281
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 1 cut(s) 189
MnlI CCTC 2 cut(s) 176, 239
Mox20I TGGCCA 1 cut(s) 365
MscI TGGCCA 1 cut(s) 365
MseI TTAA 5 cut(s) 68, 80, 149, 222, 275
Msp20I TGGCCA 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 393
MvaI CCWGG 1 cut(s) 393
NdeII GATC 2 cut(s) 115, 345
PfeI GAWTC 1 cut(s) 265
PkrI GCNGC 1 cut(s) 292
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PshBI ATTAAT 1 cut(s) 80
PsiI TTATAA 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
SaqAI TTAA 5 cut(s) 68, 80, 149, 222, 275
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 2 cut(s) 115, 345
SchI GAGTC 1 cut(s) 189
ScrFI CCNGG 1 cut(s) 393
SduI GDGCHC 1 cut(s) 261
SetI ASST 4 cut(s) 94, 135, 231, 394
Sse9I AATT 5 cut(s) 32, 69, 81, 125, 281
StyD4I CCNGG 1 cut(s) 391
TaaI ACNGT 1 cut(s) 400
TasI AATT 5 cut(s) 32, 69, 81, 125, 281
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 5 cut(s) 68, 80, 149, 222, 275
Tru9I TTAA 5 cut(s) 68, 80, 149, 222, 275
TseI GCWGC 1 cut(s) 290
TspDTI ATGAA 2 cut(s) 315, 316
VspI ATTAAT 1 cut(s) 80
XapI RAATTY 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.