RchiOBHm_Chr5g0047641

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
44195698 .. 44195991
294 bp
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UTR
Exon/CDS
Intron
PRQ32552

Sequence Viewer

Length: 294 bp
ATGTGGTACGCTTGGTTGGTTACTGTGCTGATGGATTCATACGAGCTCTTGTTTATGAATTCTTACCAAACGGTCCACTCCAGAATTTCTTATATATCATCAGCAGATAATGAAAATTCATTCCTTGGTTGGGATAAGTTGCAAGATATTGCTTTAGGTATAGCCAAAGGAATTGAATATCTTCACCAAGGTTGCGAACAACAAATCCTCCACTTTGACATCAAACCCCATAATGTGTTGCTAGACCATGATTTTACTCCAAAAGTTTCCGATTTTAGCCAAGTTGTGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

97

Amino Acids

11.28

Weight (kDa)

4.84

Isoelectric Point (pI)

29.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 10 - 92 3.3e-11 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 39 - 93 4.4e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 58, 84, 115
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 1 cut(s) 176
AloI GAACNNNNNNTCC 2 cut(s) 189, 221
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
Alw21I GWGCWC 2 cut(s) 48, 291
ApoI RAATTY 3 cut(s) 58, 84, 115
Asp700I GAANNNNTTC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 176
AvaII GGWCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 48
Bbv12I GWGCWC 2 cut(s) 48, 291
BccI CCATC 1 cut(s) 25
BfaI CTAG 1 cut(s) 242
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BpmI CTGGAG 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 124, 187
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 130
BseDI CCNNGG 2 cut(s) 124, 187
BseLI CCNNNNNNNGG 1 cut(s) 130
BsiHKAI GWGCWC 2 cut(s) 48, 291
BslI CCNNNNNNNGG 1 cut(s) 130
Bsp1286I GDGCHC 2 cut(s) 48, 291
BssECI CCNNGG 2 cut(s) 124, 187
BssT1I CCWWGG 2 cut(s) 124, 187
Bst4CI ACNGT 2 cut(s) 25, 73
Cfr13I GGNCC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 7
CviAII CATG 1 cut(s) 248
CviJI RGCY 3 cut(s) 46, 164, 279
CviKI_1 RGCY 3 cut(s) 46, 164, 279
CviQI GTAC 1 cut(s) 7
Ecl136II GAGCTC 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 124, 187
Eco24I GRGCYC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 58
EcoT14I CCWWGG 2 cut(s) 124, 187
EcoT38I GRGCYC 1 cut(s) 48
ErhI CCWWGG 2 cut(s) 124, 187
FaeI CATG 1 cut(s) 251
FaiI YATR 7 cut(s) 40, 56, 93, 95, 161, 231, 249
FatI CATG 1 cut(s) 247
FriOI GRGCYC 1 cut(s) 48
FspBI CTAG 1 cut(s) 242
GsuI CTGGAG 1 cut(s) 64
Hin1II CATG 1 cut(s) 251
HinfI GANTC 1 cut(s) 35
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 1 cut(s) 81
Hpy8I GTNNAC 1 cut(s) 76
HpyCH4III ACNGT 2 cut(s) 25, 73
HpyCH4V TGCA 1 cut(s) 142
Hsp92II CATG 1 cut(s) 251
LpnPI CCDG 1 cut(s) 94
MaeI CTAG 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 19
MboII GAAGA 1 cut(s) 173
MhlI GDGCHC 2 cut(s) 48, 291
MluCI AATT 4 cut(s) 58, 84, 115, 171
MnlI CCTC 1 cut(s) 218
MroXI GAANNNNTTC 1 cut(s) 180
NlaIII CATG 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 35
Psp124BI GAGCTC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 73
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SacI GAGCTC 1 cut(s) 48
Sau96I GGNCC 1 cut(s) 73
SduI GDGCHC 2 cut(s) 48, 291
SetI ASST 3 cut(s) 48, 160, 193
SgeI CNNG 9 cut(s) 24, 55, 61, 93, 137, 155, 200, 254, 260
SinI GGWCC 1 cut(s) 73
Sse9I AATT 4 cut(s) 58, 84, 115, 171
SspMI CTAG 1 cut(s) 242
SstI GAGCTC 1 cut(s) 48
StyI CCWWGG 2 cut(s) 124, 187
TaaI ACNGT 2 cut(s) 25, 73
TasI AATT 4 cut(s) 58, 84, 115, 171
TfiI GAWTC 1 cut(s) 35
TspDTI ATGAA 4 cut(s) 27, 71, 108, 126
VpaK11BI GGWCC 1 cut(s) 73
XapI RAATTY 3 cut(s) 58, 84, 115
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.