Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

68584037 .. 68585558

Gene Structure 1522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33901

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGCTTATGGTACAGAGGCTGATGTCTGGAGCGTAGGTCATCCCTGCCTTGAACATCATAACACTGTTAAACTTCCTCCGGACATAATAATATTCAAGCTCATGAAGGTTTATATGCGCTTATCACCTCTCCGCAAAACTGCTTTAAGGGTGGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010286 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

53

Amino Acids

6.05

Weight (kDa)

9.43

Isoelectric Point (pI)

29.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	1 cut(s)	133
AfaI	GTAC	1 cut(s)	13
AgsI	TTSAA	2 cut(s)	53, 97
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
AlwNI	CAGNNNCTG	1 cut(s)	20
Aor13HI	TCCGGA	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	49
BsaWI	WCCGGW	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
BseAI	TCCGGA	1 cut(s)	79
BseGI	GGATG	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	80
Bsp13I	TCCGGA	1 cut(s)	79
BspACI	CCGC	1 cut(s)	133
BspEI	TCCGGA	1 cut(s)	79
BspHI	TCATGA	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	63
CaiI	CAGNNNCTG	1 cut(s)	20
CciI	TCATGA	1 cut(s)	102
CfoI	GCGC	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	3 cut(s)	5, 20, 100
CviKI_1	RGCY	3 cut(s)	5, 20, 100
CviQI	GTAC	1 cut(s)	12
FaeI	CATG	1 cut(s)	106
FaiI	YATR	7 cut(s)	9, 60, 86, 104, 114, 116, 160
FatI	CATG	1 cut(s)	102
FokI	GGATG	1 cut(s)	27
GlaI	GCGC	1 cut(s)	119
GsuI	CTGGAG	1 cut(s)	49
HapII	CCGG	1 cut(s)	80
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	117
Hpy188III	TCNNGA	3 cut(s)	28, 80, 103
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	1 cut(s)	118
Kpn2I	TCCGGA	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	3 cut(s)	13, 58, 93
MnlI	CCTC	3 cut(s)	10, 87, 138
MroI	TCCGGA	1 cut(s)	79
MseI	TTAA	2 cut(s)	69, 146
MspI	CCGG	1 cut(s)	80
NlaIII	CATG	1 cut(s)	106
PagI	TCATGA	1 cut(s)	102
PstNI	CAGNNNCTG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	69, 146
SetI	ASST	4 cut(s)	40, 102, 111, 130
SgeI	CNNG	6 cut(s)	40, 57, 62, 92, 109, 115
SsiI	CCGC	1 cut(s)	133
SspI	AATATT	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	67
Tru1I	TTAA	2 cut(s)	69, 146
Tru9I	TTAA	2 cut(s)	69, 146
TscAI	CASTG	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.