RchiOBHm_Chr5g0063951
HSP70 Family

Belongs to the heat shock protein 70 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
69751789 .. 69751974
186 bp
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UTR
Exon/CDS
Intron
PRQ34002

Sequence Viewer

Length: 186 bp
ATGTTGTTGGGTACATTTGAGCTTTCAGGATTCCATCCTGCTCCTAGGGCTTTACTTCAGATTAATGTTAGCTTTAAGATCGAGGTCAATGGAATTTTGAATGTCTCTGCAGAGGAAAAGCTATCAAGTAAGAAAAATAACATCACAATCAAATATAACAAGGGTGGGCAACCCAATCAAAATTAA
Functional Annotation

Protein Analysis

61

Amino Acids

6.71

Weight (kDa)

9.6

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 2 - 57 2.6e-13 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 93
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 1 cut(s) 13
AgsI TTSAA 1 cut(s) 100
AluBI AGCT 3 cut(s) 22, 72, 121
AluI AGCT 3 cut(s) 22, 72, 121
Alw26I GTCTC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 93
AseI ATTAAT 1 cut(s) 63
AspA2I CCTAGG 1 cut(s) 44
AvrII CCTAGG 1 cut(s) 44
BccI CCATC 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 1 cut(s) 45
BfmI CTRYAG 1 cut(s) 108
BlnI CCTAGG 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 109
Bsp143I GATC 1 cut(s) 78
BspMAI CTGCAG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 1 cut(s) 81
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 1 cut(s) 78
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 34
Csp6I GTAC 1 cut(s) 12
CviJI RGCY 4 cut(s) 22, 50, 72, 121
CviKI_1 RGCY 4 cut(s) 22, 50, 72, 121
CviQI GTAC 1 cut(s) 12
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 44
FaiI YATR 1 cut(s) 156
FokI GGATG 1 cut(s) 21
FspBI CTAG 1 cut(s) 45
HinfI GANTC 1 cut(s) 30
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 1 cut(s) 27
HpyCH4V TGCA 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
Kzo9I GATC 1 cut(s) 78
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 2 cut(s) 12, 51
MaeI CTAG 1 cut(s) 45
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MluCI AATT 2 cut(s) 93, 181
MnlI CCTC 2 cut(s) 76, 106
MseI TTAA 3 cut(s) 63, 75, 184
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 1 cut(s) 78
PfeI GAWTC 1 cut(s) 30
PshBI ATTAAT 1 cut(s) 63
PstI CTGCAG 1 cut(s) 112
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 3 cut(s) 63, 75, 184
Sau3AI GATC 1 cut(s) 78
SetI ASST 4 cut(s) 24, 74, 87, 123
SfcI CTRYAG 1 cut(s) 108
SgeI CNNG 6 cut(s) 39, 50, 57, 94, 138, 172
Sse9I AATT 2 cut(s) 93, 181
SspMI CTAG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 44
TaqI TCGA 1 cut(s) 81
TasI AATT 2 cut(s) 93, 181
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 3 cut(s) 63, 75, 184
Tru9I TTAA 3 cut(s) 63, 75, 184
VspI ATTAAT 1 cut(s) 63
XapI RAATTY 1 cut(s) 93
XmaJI CCTAGG 1 cut(s) 44
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.