RchiOBHm_Chr5g0063961
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
69752306 .. 69753529
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34003

Sequence Viewer

Length: 936 bp
ATGGCATTAGCTGCAAAAGGCAAACTTCTAGCTATTGGTATCAATCTCGGAACAACATATTCATGCGTTGGCGTTTGGCAAAACAATCACATTGAGATCATACCCAATGAGCAGGGCAACAGAACAAAGCCATCCTATGTTGCTTTTACAGACACTCGACGTTTGATTGGTGATGCCGCCAAAAACCAGGTCGCTATGAACCCCATCAACACTGTTTTCGAGAATGACATGAAGCTATGGCCTTTCAAGGTGCATAGAGATATGTGGAATAGGCCAAAGATTGTGATCAACTACAAGGGTAAGGAGAGGCAGTTTTCTGCTAAGGAGATATCTTCCATGGTTCTCTATAAGATGCATCAAATAGTTGAGGCCTACCTTGGATTGATGGCCACAAAGGATGCCGGTGTTATCGCTGGTTTGAATGTCATGCGCATCATCAATGAGCCAACAACTGTTGCCATTGCCTATGGTCTTGACAAATTATGCACAAATGTTGGTCAAAAGAATGTTCTTGTTTTTGATCTTGGTGGTGGTACTTTTGATTTTTCTCTTCTCACAATAGAAGAGGGAGTTTTTGTGGTAAAAGCTATTACTGGAAATACTCATCTAGGGGGTGAAGATTTTGACAATAACATGGTGAATCATTTTGCCCAAGAATTCAAGAGGAAGAACAATAAGGACCTTAGCAATAATCCTAGAGCATTGAGGAGATTGAGGACATCTTGTGAGAGAGCAAAGAGGACACTCTCTTCGATTGCTCAAACCACAATTGATATTGATTCTTTATTCGAGGATGTTGACTTTTACACTGAAATAACCAGAGCAAAATTTGAGGAGTTCAATATGGATCTCTTCAAAACATGTTTGGAGCCTGTGAAGAAGTGTTTTTTAGATGCTAAAATGGACGAGGGTTGTTCTTATCAGTGGTTCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

311

Amino Acids

35.27

Weight (kDa)

8.41

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 11 - 302 2.8e-98 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 431
AciI CCGC 1 cut(s) 177
AclWI GGATC 1 cut(s) 855
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 2 cut(s) 656, 827
AfaI GTAC 1 cut(s) 535
AflIII ACRYGT 1 cut(s) 860
AgsI TTSAA 5 cut(s) 247, 421, 661, 841, 856
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 4 cut(s) 11, 32, 235, 587
AluI AGCT 4 cut(s) 11, 32, 235, 587
AlwI GGATC 1 cut(s) 855
AoxI GGCC 4 cut(s) 239, 272, 369, 387
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 2 cut(s) 656, 827
ArsI GACNNNNNNTTYG 4 cut(s) 174, 206, 733, 765
AspLEI GCGC 1 cut(s) 432
AspS9I GGNCC 1 cut(s) 679
AsuHPI GGTGA 3 cut(s) 182, 626, 649
AvaII GGWCC 1 cut(s) 679
BalI TGGCCA 1 cut(s) 389
BccI CCATC 3 cut(s) 139, 212, 379
BciT130I CCWGG 1 cut(s) 188
BclI TGATCA 1 cut(s) 285
BfaI CTAG 4 cut(s) 29, 608, 696, 934
BisI GCNGC 2 cut(s) 12, 177
BlsI GCNGC 2 cut(s) 13, 178
Bme1390I CCNGG 1 cut(s) 188
Bme18I GGWCC 1 cut(s) 679
BmgT120I GGNCC 1 cut(s) 679
BmiI GGNNCC 1 cut(s) 870
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 6 cut(s) 163, 342, 364, 388, 441, 883
Bpu10I CCTNAGC 2 cut(s) 321, 683
BsaBI GATNNNNATC 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 336, 376
BsaXI ACNNNNNCTCC 4 cut(s) 296, 326, 561, 591
Bse118I RCCGGY 1 cut(s) 401
Bse1I ACTGG 1 cut(s) 598
Bse3DI GCAATG 1 cut(s) 459
Bse8I GATNNNNATC 1 cut(s) 284
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 2 cut(s) 336, 376
BseGI GGATG 3 cut(s) 131, 403, 799
BseJI GATNNNNATC 1 cut(s) 284
BseMI GCAATG 1 cut(s) 459
BseNI ACTGG 1 cut(s) 598
BseRI GAGGAG 2 cut(s) 721, 848
BshFI GGCC 4 cut(s) 241, 274, 371, 389
BsiSI CCGG 1 cut(s) 402
BsnI GGCC 4 cut(s) 241, 274, 371, 389
Bsp143I GATC 4 cut(s) 96, 285, 520, 847
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 1 cut(s) 177
BspANI GGCC 4 cut(s) 241, 274, 371, 389
BspLI GGNNCC 1 cut(s) 870
BspPI GGATC 1 cut(s) 855
BsrDI GCAATG 1 cut(s) 459
BsrFI RCCGGY 1 cut(s) 401
BsrI ACTGG 1 cut(s) 598
BssAI RCCGGY 1 cut(s) 401
BssECI CCNNGG 2 cut(s) 336, 376
BssMI GATC 4 cut(s) 96, 285, 520, 847
BssT1I CCWWGG 2 cut(s) 336, 376
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 2 cut(s) 214, 454
Bst6I CTCTTC 4 cut(s) 555, 558, 754, 857
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDEI CTNAG 2 cut(s) 321, 683
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 3 cut(s) 131, 403, 799
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 4 cut(s) 99, 288, 523, 850
BstMBI GATC 4 cut(s) 96, 285, 520, 847
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 188
BstNSI RCATGY 1 cut(s) 864
BstSCI CCNGG 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 847
BstYI RGATCY 1 cut(s) 847
BsuRI GGCC 4 cut(s) 241, 274, 371, 389
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 3 cut(s) 131, 403, 799
BtsIMutI CAGTG 3 cut(s) 210, 807, 929
CfoI GCGC 1 cut(s) 432
Cfr10I RCCGGY 1 cut(s) 401
Cfr13I GGNCC 1 cut(s) 679
CsiI ACCWGGT 1 cut(s) 186
Csp6I GTAC 1 cut(s) 534
CviAII CATG 6 cut(s) 63, 229, 337, 427, 634, 861
CviQI GTAC 1 cut(s) 534
DdeI CTNAG 2 cut(s) 321, 683
DpnI GATC 4 cut(s) 98, 287, 522, 849
DpnII GATC 4 cut(s) 96, 285, 520, 847
EaeI YGGCCR 1 cut(s) 387
Eam1104I CTCTTC 4 cut(s) 555, 558, 754, 857
EarI CTCTTC 4 cut(s) 555, 558, 754, 857
Eco130I CCWWGG 2 cut(s) 336, 376
Eco147I AGGCCT 1 cut(s) 371
Eco32I GATATC 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 679
EcoO109I RGGNCCY 1 cut(s) 679
EcoRI GAATTC 1 cut(s) 656
EcoRII CCWGG 1 cut(s) 186
EcoRV GATATC 1 cut(s) 330
EcoT14I CCWWGG 2 cut(s) 336, 376
EcoT22I ATGCAT 1 cut(s) 357
ErhI CCWWGG 2 cut(s) 336, 376
FaeI CATG 6 cut(s) 66, 232, 340, 430, 637, 864
FalI AAGNNNNNCTT 2 cut(s) 9, 41
FatI CATG 6 cut(s) 62, 228, 336, 426, 633, 860
FbaI TGATCA 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 12, 177
FokI GGATG 3 cut(s) 118, 410, 806
Fsp4HI GCNGC 2 cut(s) 12, 177
FspAI RTGCGCAY 1 cut(s) 431
FspBI CTAG 4 cut(s) 29, 608, 696, 934
FspI TGCGCA 1 cut(s) 431
GlaI GCGC 1 cut(s) 431
GluI GCNGC 2 cut(s) 12, 177
HaeIII GGCC 4 cut(s) 241, 274, 371, 389
HapII CCGG 1 cut(s) 402
HhaI GCGC 1 cut(s) 432
Hin1II CATG 6 cut(s) 66, 232, 340, 430, 637, 864
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HinfI GANTC 2 cut(s) 640, 779
HpaII CCGG 1 cut(s) 402
HphI GGTGA 3 cut(s) 182, 626, 649
Hpy166II GTNNAC 1 cut(s) 799
Hpy188I TCNGA 1 cut(s) 50
Hpy188III TCNNGA 3 cut(s) 220, 473, 661
Hpy8I GTNNAC 1 cut(s) 799
Hpy99I CGWCG 1 cut(s) 162
HpyCH4III ACNGT 2 cut(s) 214, 454
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 4 cut(s) 14, 253, 355, 486
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 321, 683
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 6 cut(s) 66, 232, 340, 430, 637, 864
HspAI GCGC 1 cut(s) 430
Ksp22I TGATCA 1 cut(s) 285
Kzo9I GATC 4 cut(s) 96, 285, 520, 847
LmnI GCTCC 1 cut(s) 868
LpnPI CCDG 8 cut(s) 98, 173, 200, 399, 415, 579, 832, 885
LweI GCATC 6 cut(s) 163, 342, 364, 388, 441, 883
MabI ACCWGGT 1 cut(s) 186
MaeI CTAG 4 cut(s) 29, 608, 696, 934
MaeII ACGT 1 cut(s) 160
MalI GATC 4 cut(s) 98, 287, 522, 849
MboI GATC 4 cut(s) 96, 285, 520, 847
MboII GAAGA 8 cut(s) 324, 542, 575, 629, 679, 741, 844, 889
MfeI CAATTG 1 cut(s) 768
MflI RGATCY 1 cut(s) 847
MlsI TGGCCA 1 cut(s) 389
MluCI AATT 4 cut(s) 479, 656, 768, 827
MluNI TGGCCA 1 cut(s) 389
Mox20I TGGCCA 1 cut(s) 389
Mph1103I ATGCAT 1 cut(s) 357
MscI TGGCCA 1 cut(s) 389
MslI CAYNNNNRTG 1 cut(s) 61
Msp20I TGGCCA 1 cut(s) 389
MspI CCGG 1 cut(s) 402
MspR9I CCNGG 1 cut(s) 188
MunI CAATTG 1 cut(s) 768
MvaI CCWGG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 336
NdeII GATC 4 cut(s) 96, 285, 520, 847
NlaIII CATG 6 cut(s) 66, 232, 340, 430, 637, 864
NlaIV GGNNCC 1 cut(s) 870
NsbI TGCGCA 1 cut(s) 431
NsiI ATGCAT 1 cut(s) 357
NspI RCATGY 1 cut(s) 864
PceI AGGCCT 1 cut(s) 371
PciI ACATGT 1 cut(s) 860
PfeI GAWTC 2 cut(s) 640, 779
PkrI GCNGC 2 cut(s) 13, 178
PpuMI RGGWCCY 1 cut(s) 679
PscI ACATGT 1 cut(s) 860
Psp5II RGGWCCY 1 cut(s) 679
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 870
PspPI GGNCC 1 cut(s) 679
PspPPI RGGWCCY 1 cut(s) 679
PsuI RGATCY 1 cut(s) 847
RsaI GTAC 1 cut(s) 535
RsaNI GTAC 1 cut(s) 534
RseI CAYNNNNRTG 1 cut(s) 61
SatI GCNGC 2 cut(s) 12, 177
Sau3AI GATC 4 cut(s) 96, 285, 520, 847
Sau96I GGNCC 1 cut(s) 679
ScrFI CCNGG 1 cut(s) 188
SetI ASST 9 cut(s) 13, 34, 163, 192, 237, 252, 378, 589, 684
SexAI ACCWGGT 1 cut(s) 186
SfaNI GCATC 6 cut(s) 163, 342, 364, 388, 441, 883
SinI GGWCC 1 cut(s) 679
SmiMI CAYNNNNRTG 1 cut(s) 61
Sse9I AATT 4 cut(s) 479, 656, 768, 827
SseBI AGGCCT 1 cut(s) 371
SsiI CCGC 1 cut(s) 177
SspMI CTAG 4 cut(s) 29, 608, 696, 934
StuI AGGCCT 1 cut(s) 371
StyD4I CCNGG 1 cut(s) 186
StyI CCWWGG 2 cut(s) 336, 376
TaaI ACNGT 2 cut(s) 214, 454
TaiI ACGT 1 cut(s) 163
TaqI TCGA 4 cut(s) 157, 219, 752, 789
TasI AATT 4 cut(s) 479, 656, 768, 827
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 2 cut(s) 640, 779
TscAI CASTG 3 cut(s) 217, 814, 929
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 3 cut(s) 51, 212, 245
TspRI CASTG 3 cut(s) 217, 814, 929
VpaK11BI GGWCC 1 cut(s) 679
XapI RAATTY 2 cut(s) 656, 827
XceI RCATGY 1 cut(s) 864
XspI CTAG 4 cut(s) 29, 608, 696, 934
Zsp2I ATGCAT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.