Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

75266628 .. 75267335

Gene Structure 708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34479

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGATAAACTTAGACCTCGGTCACAACCACTTTTCGGGTACTATTCCCAAGTGTTTGAATAACCTGAAAAGTCTGCAATATGGTAATTCCAGTTATAGTGTCCAGTTTGGTGATTATATTGAGCAAGCAACAGTGATATCAAAAGGGCAAGTACTCGAATATTATGACACACTAAAGTTGGTAAAGAGCATTGATCTTTCGTCAAATAATTTAGAAGGTGAAATCCCTGAGGAAATAAGCAGTCTTGTTGCATTGGGTACCCTCAACTTGTCAATGAATCAGTTAAATGGAAACATTCCCTCACAGATTGGACGTTTACGTTGGTTGGAAACTCTTGATCTCTCATATAACAACCTCTATGGACAGATTCCTAGAAGTTTTCCTTTTTTAACCTCATTGTCTCACTTGAACTTGTCTCACAACAATTTGGCGGGAAGAATTCCTTCGGGCAACCAACTCCAGACACTTAACGAATCATCCATTTACGAAGGCAATCCATGGTTGTGTGGGGTTCCACTTTCAAGATATTGCCCAGGAGATGAAAGAAATGATGAGGGTGCAAAAGACAGTGAAGAAGATGGAAATGAGAATGAAAAGCTTTGGTCTTATGTGAGCATGGTACTCGGATTTATTGTTGGCTTTTGGGGGTGTTTGTGGCACATTACTCATAAAAAAGTCATGGAGGTATGCCTACTTTCGATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0007389 GO:0008150 GO:0009505 GO:0009531 GO:0009553 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0010154 GO:0010453 GO:0022414 GO:0022603 GO:0030312 GO:0032501 GO:0032502 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045595 GO:0048226 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0051302 GO:0061458 GO:0065001 GO:0065007 GO:0071944 GO:0090558 GO:0090708 GO:0099402 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

235

Amino Acids

26.3

Weight (kDa)

4.99

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	59 - 159	3.8e-08	Leucine-rich repeat region
LRR_8	PF13855	105 - 143	5.4e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	257
AciI	CCGC	1 cut(s)	431
AcsI	RAATTY	1 cut(s)	438
AfaI	GTAC	4 cut(s)	40, 153, 259, 621
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	3 cut(s)	58, 409, 522
AjnI	CCWGG	1 cut(s)	532
AluBI	AGCT	1 cut(s)	598
AluI	AGCT	1 cut(s)	598
Alw26I	GTCTC	2 cut(s)	405, 420
ApoI	RAATTY	1 cut(s)	438
Asp700I	GAANNNNTTC	1 cut(s)	442
Asp718I	GGTACC	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	122, 230
AxyI	CCTNAGG	1 cut(s)	228
BanI	GGYRCC	1 cut(s)	257
BccI	CCATC	1 cut(s)	572
BcgI	CGANNNNNNTGC	2 cut(s)	604, 638
BciT130I	CCWGG	1 cut(s)	534
BcoDI	GTCTC	2 cut(s)	405, 420
BfaI	CTAG	1 cut(s)	372
BmcAI	AGTACT	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	534
BmiI	GGNNCC	2 cut(s)	259, 513
BmrFI	CCNGG	1 cut(s)	534
BoxI	GACNNNNGTC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	443
BsaJI	CCNNGG	3 cut(s)	16, 497, 532
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	90, 103
Bse21I	CCTNAGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	3 cut(s)	16, 497, 532
BseGI	GGATG	1 cut(s)	476
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	2 cut(s)	90, 103
BshNI	GGYRCC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	405, 420
Bsp143I	GATC	2 cut(s)	193, 337
Bsp19I	CCATGG	1 cut(s)	497
BspACI	CCGC	1 cut(s)	431
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	259, 513
BspT107I	GGYRCC	1 cut(s)	257
BsrI	ACTGG	2 cut(s)	90, 103
BssECI	CCNNGG	3 cut(s)	16, 497, 532
BssMI	GATC	2 cut(s)	193, 337
BssT1I	CCWWGG	1 cut(s)	497
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	2 cut(s)	133, 569
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	10, 228
BstDSI	CCRYGG	1 cut(s)	497
BstF5I	GGATG	1 cut(s)	476
BstKTI	GATC	2 cut(s)	196, 340
BstMAI	GTCTC	2 cut(s)	405, 420
BstMBI	GATC	2 cut(s)	193, 337
BstNI	CCWGG	1 cut(s)	534
BstPAI	GACNNNNGTC	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	532
Bsu36I	CCTNAGG	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	497
BtsCI	GGATG	1 cut(s)	476
BtsIMutI	CAGTG	2 cut(s)	138, 574
Cac8I	GCNNGC	1 cut(s)	126
Csp6I	GTAC	4 cut(s)	39, 152, 258, 620
CviAII	CATG	3 cut(s)	498, 616, 679
CviJI	RGCY	2 cut(s)	598, 639
CviKI_1	RGCY	2 cut(s)	598, 639
CviQI	GTAC	4 cut(s)	39, 152, 258, 620
DdeI	CTNAG	2 cut(s)	10, 228
DpnI	GATC	2 cut(s)	195, 339
DpnII	GATC	2 cut(s)	193, 337
Eco130I	CCWWGG	1 cut(s)	497
Eco32I	GATATC	1 cut(s)	138
Eco81I	CCTNAGG	1 cut(s)	228
EcoRI	GAATTC	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	532
EcoRV	GATATC	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	497
ErhI	CCWWGG	1 cut(s)	497
FaeI	CATG	3 cut(s)	501, 619, 682
FalI	AAGNNNNNCTT	4 cut(s)	367, 399, 427, 459
FatI	CATG	3 cut(s)	497, 615, 678
FauI	CCCGC	1 cut(s)	424
FokI	GGATG	1 cut(s)	463
FspBI	CTAG	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	443
Hin1II	CATG	3 cut(s)	501, 619, 682
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	4 cut(s)	277, 367, 473, 700
HphI	GGTGA	2 cut(s)	122, 230
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188I	TCNGA	1 cut(s)	626
Hpy188III	TCNNGA	3 cut(s)	335, 460, 522
Hpy8I	GTNNAC	1 cut(s)	317
HpyAV	CCTTC	3 cut(s)	209, 453, 482
HpyCH4III	ACNGT	2 cut(s)	133, 569
HpyCH4IV	ACGT	2 cut(s)	313, 319
HpyCH4V	TGCA	3 cut(s)	76, 251, 560
HpyF3I	CTNAG	2 cut(s)	10, 228
HpySE526I	ACGT	2 cut(s)	313, 319
Hsp92II	CATG	3 cut(s)	501, 619, 682
KpnI	GGTACC	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	193, 337
LpnPI	CCDG	7 cut(s)	77, 103, 116, 240, 473, 519, 546
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	2 cut(s)	313, 319
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	2 cut(s)	195, 339
MboI	GATC	2 cut(s)	193, 337
MboII	GAAGA	3 cut(s)	447, 584, 587
MluCI	AATT	4 cut(s)	85, 208, 424, 438
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	8 cut(s)	26, 223, 272, 310, 365, 403, 547, 676
MroXI	GAANNNNTTC	1 cut(s)	442
MseI	TTAA	3 cut(s)	284, 389, 468
MslI	CAYNNNNRTG	1 cut(s)	502
MspR9I	CCNGG	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	534
NcoI	CCATGG	1 cut(s)	497
NdeII	GATC	2 cut(s)	193, 337
NlaIII	CATG	3 cut(s)	501, 619, 682
NlaIV	GGNNCC	2 cut(s)	259, 513
NmuCI	GTSAC	1 cut(s)	20
PdmI	GAANNNNTTC	1 cut(s)	442
PfeI	GAWTC	4 cut(s)	277, 367, 473, 700
PshAI	GACNNNNGTC	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	532
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	2 cut(s)	259, 513
RsaI	GTAC	4 cut(s)	40, 153, 259, 621
RsaNI	GTAC	4 cut(s)	39, 152, 258, 620
RseI	CAYNNNNRTG	1 cut(s)	502
SaqAI	TTAA	3 cut(s)	284, 389, 468
Sau3AI	GATC	2 cut(s)	193, 337
ScaI	AGTACT	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	534
SetI	ASST	9 cut(s)	18, 66, 220, 316, 322, 357, 395, 600, 687
SmiMI	CAYNNNNRTG	1 cut(s)	502
Sse9I	AATT	4 cut(s)	85, 208, 424, 438
SsiI	CCGC	1 cut(s)	431
SspI	AATATT	1 cut(s)	161
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	532
StyI	CCWWGG	1 cut(s)	497
TaaI	ACNGT	2 cut(s)	133, 569
TaiI	ACGT	2 cut(s)	316, 322
TaqI	TCGA	2 cut(s)	156, 698
TaqII	GACCGA	1 cut(s)	8
TasI	AATT	4 cut(s)	85, 208, 424, 438
TatI	WGTACW	1 cut(s)	151
TfiI	GAWTC	4 cut(s)	277, 367, 473, 700
Tru1I	TTAA	3 cut(s)	284, 389, 468
Tru9I	TTAA	3 cut(s)	284, 389, 468
TscAI	CASTG	2 cut(s)	138, 574
TseFI	GTSAC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	290, 555, 606
TspRI	CASTG	2 cut(s)	138, 574
XapI	RAATTY	1 cut(s)	438
XmnI	GAANNNNTTC	1 cut(s)	442
XspI	CTAG	1 cut(s)	372
ZrmI	AGTACT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.