RchiOBHm_Chr5g0070891

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
76710502 .. 76711797
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34606

Sequence Viewer

Length: 780 bp
ATGTATGACAAAATCATCAAGGCAACCAATGATTTTGATGCTCAATATTGCATCGGAAAGGGAGGATCCGGAAGTGTCTACAAGGCAGAGTTGTTATTAGGTAGCATTTTTGCAGTGAAGAAACTCCACCTGATACTTGATGGTGAGGAGTCGTCTGGGAAGGAATTCCTTGACGAAATAAGGGTACTAATAAAAATACGGCACCGGAACATTGTGAAACTTCGTCGCTTGGCTTCAATCTTGAGCAAAGAATACGAAGCCAGCAAACTGGATTGGAGTGCAAGGGTGAGGATTGTGAAAGGTGTAGCTCATGCCCTGTCTTATATGCATCATGATTGCTCACCACCTATAGTGCATCGAGACATATCAAGTAACAACATTTTGCTCAATTACGAATATGAGCCTTGTGTTTCAGACTTTGGCACCGCTAAGCTTCTAAATGCAGACTCATCAAATTGGACTGCTCGTGCAGGCACATATGGATATACAACGCTAGATTACTCCTCGCACTTCCAAATTTCTCCCAATTTGGTCCAAAGTGACTATTTTACCCCTCACTTCCTTTTTTTTTTTTTTTTTTTTCCGTGTCCTCTCTCTCTCTCTAATATCCTCATCCTCTTCTTTTTCAAGCCTGATATGGCAACAATATTTCCCACAAGTTTCATAAATACAGGATGCCAGGATGACTCTCTAATCCAAAGCCTTGTTGCTTTTCGAATTGCTATCACCAGCAACACAACACAAATCCCAATTCTAGAGATGGTGGTGGGATTAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

259

Amino Acids

29.27

Weight (kDa)

7.08

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 17 - 163 6.1e-18 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 78 - 152 4.9e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 201, 422
AccI GTMKAC 1 cut(s) 78
AccIII TCCGGA 1 cut(s) 68
AciI CCGC 1 cut(s) 426
AclWI GGATC 2 cut(s) 60, 73
AcsI RAATTY 2 cut(s) 164, 516
AfaI GTAC 1 cut(s) 186
AgsI TTSAA 2 cut(s) 237, 628
AjnI CCWGG 1 cut(s) 678
AluBI AGCT 2 cut(s) 308, 433
AluI AGCT 2 cut(s) 308, 433
Alw26I GTCTC 1 cut(s) 354
AlwI GGATC 2 cut(s) 60, 73
Aor13HI TCCGGA 1 cut(s) 68
ApoI RAATTY 2 cut(s) 164, 516
Asp700I GAANNNNTTC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 532
AsuHPI GGTGA 4 cut(s) 155, 298, 333, 718
AsuII TTCGAA 1 cut(s) 715
AvaII GGWCC 1 cut(s) 532
BamHI GGATCC 1 cut(s) 65
BanI GGYRCC 2 cut(s) 201, 422
BauI CACGAG 1 cut(s) 465
BccI CCATC 2 cut(s) 134, 754
BceAI ACGGC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 680
BcoDI GTCTC 1 cut(s) 354
BfaI CTAG 2 cut(s) 494, 755
BfmI CTRYAG 1 cut(s) 348
BlpI GCTNAGC 1 cut(s) 429
Bme1390I CCNGG 1 cut(s) 680
Bme18I GGWCC 1 cut(s) 532
BmgT120I GGNCC 1 cut(s) 532
BmiI GGNNCC 3 cut(s) 67, 203, 424
BmrFI CCNGG 1 cut(s) 680
BmsI GCATC 5 cut(s) 28, 60, 337, 364, 665
Bpu1102I GCTNAGC 1 cut(s) 429
Bpu14I TTCGAA 1 cut(s) 715
BpuEI CTTGAG 1 cut(s) 262
BsaWI WCCGGW 2 cut(s) 68, 204
Bse1I ACTGG 1 cut(s) 273
BseAI TCCGGA 1 cut(s) 68
BseBI CCWGG 1 cut(s) 680
BseGI GGATG 3 cut(s) 612, 680, 688
BseNI ACTGG 1 cut(s) 273
BseRI GAGGAG 2 cut(s) 161, 493
BsgI GTGCAG 1 cut(s) 489
BshNI GGYRCC 2 cut(s) 201, 422
BsiSI CCGG 2 cut(s) 69, 205
BsmAI GTCTC 1 cut(s) 354
Bsp119I TTCGAA 1 cut(s) 715
Bsp13I TCCGGA 1 cut(s) 68
Bsp143I GATC 1 cut(s) 65
Bsp1720I GCTNAGC 1 cut(s) 429
BspACI CCGC 1 cut(s) 426
BspEI TCCGGA 1 cut(s) 68
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 3 cut(s) 67, 203, 424
BspPI GGATC 2 cut(s) 60, 73
BspT104I TTCGAA 1 cut(s) 715
BspT107I GGYRCC 2 cut(s) 201, 422
BsrI ACTGG 1 cut(s) 273
BssMI GATC 1 cut(s) 65
BssSI CACGAG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 680
Bst6I CTCTTC 1 cut(s) 623
BstBI TTCGAA 1 cut(s) 715
BstC8I GCNNGC 2 cut(s) 262, 472
BstDEI CTNAG 1 cut(s) 429
BstF5I GGATG 3 cut(s) 612, 680, 688
BstKTI GATC 1 cut(s) 68
BstMAI GTCTC 1 cut(s) 354
BstMBI GATC 1 cut(s) 65
BstNI CCWGG 1 cut(s) 680
BstSCI CCNGG 1 cut(s) 678
BstSFI CTRYAG 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 65
BstXI CCANNNNNNTGG 1 cut(s) 268
BstYI RGATCY 1 cut(s) 65
BtsCI GGATG 3 cut(s) 612, 680, 688
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 262, 472
CciI TCATGA 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 532
Csp6I GTAC 1 cut(s) 185
CviAII CATG 2 cut(s) 311, 332
CviJI RGCY 7 cut(s) 233, 260, 308, 403, 433, 631, 702
CviKI_1 RGCY 7 cut(s) 233, 260, 308, 403, 433, 631, 702
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 1 cut(s) 429
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 623
EarI CTCTTC 1 cut(s) 623
Eco47I GGWCC 1 cut(s) 532
EcoRI GAATTC 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 678
EcoT22I ATGCAT 1 cut(s) 330
FaeI CATG 2 cut(s) 314, 335
FatI CATG 2 cut(s) 310, 331
FauNDI CATATG 1 cut(s) 478
FblI GTMKAC 1 cut(s) 78
FokI GGATG 3 cut(s) 599, 687, 695
FspBI CTAG 2 cut(s) 494, 755
HapII CCGG 2 cut(s) 69, 205
Hin1II CATG 2 cut(s) 314, 335
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 3 cut(s) 149, 446, 686
HpaII CCGG 2 cut(s) 69, 205
HphI GGTGA 4 cut(s) 155, 298, 333, 718
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 56, 415
Hpy188III TCNNGA 5 cut(s) 69, 241, 332, 359, 755
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 1 cut(s) 228
HpyAV CCTTC 1 cut(s) 154
HpyCH4V TGCA 7 cut(s) 51, 113, 281, 328, 355, 443, 470
HpyF3I CTNAG 1 cut(s) 429
Hsp92II CATG 2 cut(s) 314, 335
Kpn2I TCCGGA 1 cut(s) 68
Kzo9I GATC 1 cut(s) 65
LweI GCATC 5 cut(s) 28, 60, 337, 364, 665
MaeI CTAG 2 cut(s) 494, 755
MaeIII GTNAC 2 cut(s) 371, 539
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MboII GAAGA 2 cut(s) 130, 610
MflI RGATCY 1 cut(s) 65
MluCI AATT 7 cut(s) 164, 388, 454, 516, 526, 717, 750
MlyI GAGTC 3 cut(s) 158, 440, 680
MnlI CCTC 8 cut(s) 56, 139, 282, 514, 564, 600, 620, 626
Mph1103I ATGCAT 1 cut(s) 330
MroI TCCGGA 1 cut(s) 68
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 1 cut(s) 773
MspI CCGG 2 cut(s) 69, 205
MspR9I CCNGG 1 cut(s) 680
MvaI CCWGG 1 cut(s) 680
NdeI CATATG 1 cut(s) 478
NdeII GATC 1 cut(s) 65
NlaIII CATG 2 cut(s) 314, 335
NlaIV GGNNCC 3 cut(s) 67, 203, 424
NmuCI GTSAC 1 cut(s) 539
NsiI ATGCAT 1 cut(s) 330
NspV TTCGAA 1 cut(s) 715
PagI TCATGA 1 cut(s) 331
PdmI GAANNNNTTC 1 cut(s) 164
PleI GAGTC 3 cut(s) 157, 440, 680
PpsI GAGTC 3 cut(s) 157, 440, 680
Psp6I CCWGG 1 cut(s) 678
PspGI CCWGG 1 cut(s) 678
PspN4I GGNNCC 3 cut(s) 67, 203, 424
PspPI GGNCC 1 cut(s) 532
PsuI RGATCY 1 cut(s) 65
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SaqAI TTAA 1 cut(s) 773
Sau3AI GATC 1 cut(s) 65
Sau96I GGNCC 1 cut(s) 532
SchI GAGTC 3 cut(s) 158, 440, 680
ScrFI CCNGG 1 cut(s) 680
SetI ASST 7 cut(s) 103, 132, 304, 310, 349, 435, 779
SfaNI GCATC 5 cut(s) 28, 60, 337, 364, 665
SfcI CTRYAG 1 cut(s) 348
SfuI TTCGAA 1 cut(s) 715
SinI GGWCC 1 cut(s) 532
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 7 cut(s) 164, 388, 454, 516, 526, 717, 750
SsiI CCGC 1 cut(s) 426
SspI AATATT 2 cut(s) 47, 648
SspMI CTAG 2 cut(s) 494, 755
StyD4I CCNGG 1 cut(s) 678
TaqI TCGA 2 cut(s) 358, 715
TasI AATT 7 cut(s) 164, 388, 454, 516, 526, 717, 750
Tru1I TTAA 1 cut(s) 773
Tru9I TTAA 1 cut(s) 773
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 1 cut(s) 539
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 1 cut(s) 652
TspGWI ACGGA 1 cut(s) 573
TspRI CASTG 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 532
XapI RAATTY 2 cut(s) 164, 516
XbaI TCTAGA 1 cut(s) 754
XmiI GTMKAC 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 2 cut(s) 494, 755
Zsp2I ATGCAT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.