Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

81320675 .. 81322067

Gene Structure 1393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35021

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAAATCTAAGTTTGTTTTGTGTGCTCATCTCTTTTTCCTGGCGGATCTGCGTAAAATAATTATGAAGATGCTTGCCATGGAGATGCATATCACAGCTCTCCCATCCAATGACAGTTTGGAATCATTATTTGCTTCCTGGATTTGCAGGACTATTAAGTGCTTCACTTCTCTGCTGTTCTGTATATGTCAGCACATTCTCATTAGGCCAAAGTGGCCTCTCATTAGTGAAATTATGTTGAGTTTGAGAGAAGTGATGGCCAAAAGAAAAAGTCCGAGGGAAGCAATGTTGTATGACAGCATGACTCGGAGTTTCCAAGTACCATTCAAAAAAGAAGTGAAGTTAATTGCAAGGCTCCAACACAGAGATCTTGTTCGACTGATTGGTTGCTGTGTTGATGCGGATGAAAAGATGCTGATTTACGAATACATGGAAAATAAAGGCCTCGATTCTTTTTTATTTGATAAAGCGAAAAGGTATTTGCTGGATTGGCAAAAGCGTTCCAACATTGTCTGTGGGATTGCTCGAGGACTTCCTTATCTTCACCAGGATTCGAGATTCAAAATCATCCATAGGGCCCTCAAGGCAAGCAACATTCTACTTGATGGAGAATTGGACCCCAAGATATCGGACTTTGGAATGGCAAGAATATTTGGTCAGGATCAGACAGAAGCCAATACAAAAAAAGTAGTGGGAACATATGGCTATATGTCTCCTGAATACGCAATGGATGGTCTCTTCTCAATCAAGTCGGATATATTTAGTTTTGGTGTTCTAGTGTTGGAGATTGTCAGTGGTCAAAAGAACAGAGTATTCTATTATTCAAACAATGAGCTAAACCTCCTAGGACATGTCGGGCTTTTATGCGTCCAAGAGCGTGCAGAAGATAGGCCTACAATGTCCTCTGTGGTTTTAATGTTAAGAAGTGAAACTGCATCACTACCGCAGCCTAAAAACCCCTGTTTTTGCCTAACAAGGAAACCCAAAACAGACGAGTCATGCACTGTAATGTTAACTATCACAATATTAGATCCTAGCTATTGTAAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 DUF3660 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

350

Amino Acids

40.21

Weight (kDa)

9.0

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	101 - 269	1.9e-36	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	109 - 268	1.6e-33	Protein kinase domain
DUF3403	PF11883	309 - 345	1.4e-06	Domain of unknown function (DUF3403)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	44, 401, 944
AclWI	GGATC	3 cut(s)	54, 669, 1025
AcoI	YGGCCR	1 cut(s)	258
AfaI	GTAC	1 cut(s)	321
AflIII	ACRYGT	1 cut(s)	850
AgsI	TTSAA	3 cut(s)	328, 562, 825
AjnI	CCWGG	3 cut(s)	39, 137, 546
AluBI	AGCT	3 cut(s)	98, 835, 1038
AluI	AGCT	3 cut(s)	98, 835, 1038
Alw21I	GWGCWC	1 cut(s)	28
Alw26I	GTCTC	2 cut(s)	717, 740
AlwI	GGATC	3 cut(s)	54, 669, 1025
Ama87I	CYCGRG	1 cut(s)	525
AoxI	GGCC	6 cut(s)	206, 215, 258, 442, 576, 890
ApaI	GGGCCC	1 cut(s)	580
ApeKI	GCWGC	1 cut(s)	946
AspA2I	CCTAGG	1 cut(s)	844
AspS9I	GGNCC	3 cut(s)	576, 577, 616
AsuHPI	GGTGA	1 cut(s)	536
AvaI	CYCGRG	1 cut(s)	525
AvaII	GGWCC	1 cut(s)	616
AvrII	CCTAGG	1 cut(s)	844
BaeGI	GKGCMC	1 cut(s)	580
BalI	TGGCCA	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	580
Bbv12I	GWGCWC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	958
BccI	CCATC	4 cut(s)	112, 250, 599, 725
BciT130I	CCWGG	3 cut(s)	41, 139, 548
BcoDI	GTCTC	2 cut(s)	717, 740
BfaI	CTAG	3 cut(s)	776, 845, 1035
BglI	GCCNNNNNGGC	2 cut(s)	214, 584
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	1 cut(s)	947
BlnI	CCTAGG	1 cut(s)	844
BlsI	GCNGC	1 cut(s)	948
Bme1390I	CCNGG	3 cut(s)	41, 139, 548
Bme18I	GGWCC	1 cut(s)	616
BmeT110I	CYCGRG	1 cut(s)	525
BmgT120I	GGNCC	3 cut(s)	576, 577, 616
BmiI	GGNNCC	3 cut(s)	356, 578, 618
BmrFI	CCNGG	3 cut(s)	41, 139, 548
BmsI	GCATC	5 cut(s)	60, 75, 388, 402, 944
BpuEI	CTTGAG	1 cut(s)	566
BsaBI	GATNNNNATC	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	740
BsaJI	CCNNGG	3 cut(s)	78, 275, 844
Bse3DI	GCAATG	2 cut(s)	291, 732
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	3 cut(s)	41, 139, 548
BseDI	CCNNGG	3 cut(s)	78, 275, 844
BseGI	GGATG	4 cut(s)	104, 409, 567, 736
BseJI	GATNNNNATC	1 cut(s)	89
BseMI	GCAATG	2 cut(s)	291, 732
BseSI	GKGCMC	1 cut(s)	580
BseXI	GCAGC	1 cut(s)	958
BsgI	GTGCAG	1 cut(s)	900
BshFI	GGCC	6 cut(s)	208, 217, 260, 444, 578, 892
BsiHKAI	GWGCWC	1 cut(s)	28
BsiHKCI	CYCGRG	1 cut(s)	525
BsmAI	GTCTC	2 cut(s)	717, 740
BsnI	GGCC	6 cut(s)	208, 217, 260, 444, 578, 892
Bso31I	GGTCTC	1 cut(s)	740
BsoBI	CYCGRG	1 cut(s)	525
Bsp120I	GGGCCC	1 cut(s)	576
Bsp1286I	GDGCHC	2 cut(s)	28, 580
Bsp143I	GATC	4 cut(s)	46, 367, 661, 1030
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	3 cut(s)	44, 401, 944
BspANI	GGCC	6 cut(s)	208, 217, 260, 444, 578, 892
BspLI	GGNNCC	3 cut(s)	356, 578, 618
BspPI	GGATC	3 cut(s)	54, 669, 1025
BspTNI	GGTCTC	1 cut(s)	740
BsrDI	GCAATG	2 cut(s)	291, 732
BssECI	CCNNGG	3 cut(s)	78, 275, 844
BssMI	GATC	4 cut(s)	46, 367, 661, 1030
BssT1I	CCWWGG	2 cut(s)	78, 844
Bst2UI	CCWGG	3 cut(s)	41, 139, 548
Bst4CI	ACNGT	2 cut(s)	116, 1006
Bst6I	CTCTTC	1 cut(s)	743
BstC8I	GCNNGC	3 cut(s)	75, 589, 879
BstDEI	CTNAG	1 cut(s)	9
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	4 cut(s)	104, 409, 567, 736
BstKTI	GATC	4 cut(s)	49, 370, 664, 1033
BstMAI	GTCTC	2 cut(s)	717, 740
BstMBI	GATC	4 cut(s)	46, 367, 661, 1030
BstMWI	GCNNNNNNNGC	3 cut(s)	214, 490, 584
BstNI	CCWGG	3 cut(s)	41, 139, 548
BstNSI	RCATGY	1 cut(s)	854
BstSCI	CCNGG	3 cut(s)	39, 137, 546
BstSLI	GKGCMC	1 cut(s)	580
BstV1I	GCAGC	1 cut(s)	958
BstX2I	RGATCY	3 cut(s)	46, 367, 1030
BstYI	RGATCY	3 cut(s)	46, 367, 1030
BsuRI	GGCC	6 cut(s)	208, 217, 260, 444, 578, 892
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	4 cut(s)	104, 409, 567, 736
BtsIMutI	CAGTG	2 cut(s)	799, 1002
Cac8I	GCNNGC	3 cut(s)	75, 589, 879
Cfr13I	GGNCC	3 cut(s)	576, 577, 616
CseI	GACGC	1 cut(s)	856
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	5 cut(s)	79, 301, 430, 851, 999
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	4 cut(s)	48, 369, 663, 1032
DpnII	GATC	4 cut(s)	46, 367, 661, 1030
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	743
EarI	CTCTTC	1 cut(s)	743
EciI	GGCGGA	1 cut(s)	59
Eco130I	CCWWGG	2 cut(s)	78, 844
Eco147I	AGGCCT	2 cut(s)	444, 892
Eco24I	GRGCYC	1 cut(s)	580
Eco31I	GGTCTC	1 cut(s)	740
Eco32I	GATATC	1 cut(s)	627
Eco47I	GGWCC	1 cut(s)	616
Eco88I	CYCGRG	1 cut(s)	525
EcoO109I	RGGNCCY	2 cut(s)	576, 577
EcoRII	CCWGG	3 cut(s)	39, 137, 546
EcoRV	GATATC	1 cut(s)	627
EcoT14I	CCWWGG	2 cut(s)	78, 844
EcoT22I	ATGCAT	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	580
ErhI	CCWWGG	2 cut(s)	78, 844
FaeI	CATG	5 cut(s)	82, 304, 433, 854, 1002
FatI	CATG	5 cut(s)	78, 300, 429, 850, 998
FauNDI	CATATG	1 cut(s)	700
Fnu4HI	GCNGC	1 cut(s)	947
FokI	GGATG	4 cut(s)	91, 416, 554, 743
FriOI	GRGCYC	1 cut(s)	580
Fsp4HI	GCNGC	1 cut(s)	947
FspBI	CTAG	3 cut(s)	776, 845, 1035
GluI	GCNGC	1 cut(s)	947
HaeIII	GGCC	6 cut(s)	208, 217, 260, 444, 578, 892
HgaI	GACGC	1 cut(s)	856
Hin1II	CATG	5 cut(s)	82, 304, 433, 854, 1002
HincII	GTYRAC	1 cut(s)	1014
HindII	GTYRAC	1 cut(s)	1014
HinfI	GANTC	6 cut(s)	122, 304, 449, 551, 558, 995
HpaI	GTTAAC	1 cut(s)	1014
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	1 cut(s)	1014
Hpy188I	TCNGA	5 cut(s)	276, 309, 631, 666, 754
Hpy188III	TCNNGA	3 cut(s)	555, 659, 716
Hpy8I	GTNNAC	1 cut(s)	1014
HpyCH4III	ACNGT	2 cut(s)	116, 1006
HpyCH4V	TGCA	6 cut(s)	88, 147, 350, 881, 935, 1002
HpyF10VI	GCNNNNNNNGC	3 cut(s)	214, 490, 584
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	5 cut(s)	82, 304, 433, 854, 1002
KspAI	GTTAAC	1 cut(s)	1014
Kzo9I	GATC	4 cut(s)	46, 367, 661, 1030
LmnI	GCTCC	1 cut(s)	360
Lsp1109I	GCAGC	1 cut(s)	958
LweI	GCATC	5 cut(s)	60, 75, 388, 402, 944
MaeI	CTAG	3 cut(s)	776, 845, 1035
MalI	GATC	4 cut(s)	48, 369, 663, 1032
MboI	GATC	4 cut(s)	46, 367, 661, 1030
MboII	GAAGA	4 cut(s)	79, 533, 730, 896
MflI	RGATCY	3 cut(s)	46, 367, 1030
MhlI	GDGCHC	2 cut(s)	28, 580
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	4 cut(s)	60, 231, 345, 611
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	2 cut(s)	298, 1004
MmeI	TCCRAC	4 cut(s)	382, 528, 732, 762
MnlI	CCTC	7 cut(s)	228, 270, 455, 521, 590, 851, 913
Mox20I	TGGCCA	1 cut(s)	260
Mph1103I	ATGCAT	1 cut(s)	90
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	5 cut(s)	156, 344, 914, 920, 1013
MslI	CAYNNNNRTG	2 cut(s)	83, 1007
Msp20I	TGGCCA	1 cut(s)	260
MspR9I	CCNGG	3 cut(s)	41, 139, 548
MvaI	CCWGG	3 cut(s)	41, 139, 548
MwoI	GCNNNNNNNGC	3 cut(s)	214, 490, 584
NcoI	CCATGG	1 cut(s)	78
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	4 cut(s)	46, 367, 661, 1030
NlaIII	CATG	5 cut(s)	82, 304, 433, 854, 1002
NlaIV	GGNNCC	3 cut(s)	356, 578, 618
NsiI	ATGCAT	1 cut(s)	90
NspI	RCATGY	1 cut(s)	854
PaeR7I	CTCGAG	1 cut(s)	525
PceI	AGGCCT	2 cut(s)	444, 892
PciI	ACATGT	1 cut(s)	850
PfeI	GAWTC	4 cut(s)	122, 449, 551, 558
PfoI	TCCNGGA	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	948
PleI	GAGTC	2 cut(s)	298, 1003
PpsI	GAGTC	2 cut(s)	298, 1003
PscI	ACATGT	1 cut(s)	850
Psp6I	CCWGG	3 cut(s)	39, 137, 546
PspGI	CCWGG	3 cut(s)	39, 137, 546
PspN4I	GGNNCC	3 cut(s)	356, 578, 618
PspOMI	GGGCCC	1 cut(s)	576
PspPI	GGNCC	3 cut(s)	576, 577, 616
PspXI	VCTCGAGB	1 cut(s)	525
PsuI	RGATCY	3 cut(s)	46, 367, 1030
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
RseI	CAYNNNNRTG	2 cut(s)	83, 1007
SaqAI	TTAA	5 cut(s)	156, 344, 914, 920, 1013
SatI	GCNGC	1 cut(s)	947
Sau3AI	GATC	4 cut(s)	46, 367, 661, 1030
Sau96I	GGNCC	3 cut(s)	576, 577, 616
SchI	GAGTC	2 cut(s)	298, 1004
ScrFI	CCNGG	3 cut(s)	41, 139, 548
SduI	GDGCHC	2 cut(s)	28, 580
SetI	ASST	6 cut(s)	100, 479, 837, 843, 1040, 1050
SfaNI	GCATC	5 cut(s)	60, 75, 388, 402, 944
SfiI	GGCCNNNNNGGCC	1 cut(s)	214
Sfr274I	CTCGAG	1 cut(s)	525
SinI	GGWCC	1 cut(s)	616
SlaI	CTCGAG	1 cut(s)	525
SmiMI	CAYNNNNRTG	2 cut(s)	83, 1007
SmlI	CTYRAG	2 cut(s)	525, 581
SmoI	CTYRAG	2 cut(s)	525, 581
Sse9I	AATT	4 cut(s)	60, 231, 345, 611
SseBI	AGGCCT	2 cut(s)	444, 892
SsiI	CCGC	3 cut(s)	44, 401, 944
SspI	AATATT	2 cut(s)	651, 1026
SspMI	CTAG	3 cut(s)	776, 845, 1035
StuI	AGGCCT	2 cut(s)	444, 892
StyD4I	CCNGG	3 cut(s)	39, 137, 546
StyI	CCWWGG	2 cut(s)	78, 844
TaaI	ACNGT	2 cut(s)	116, 1006
TaqI	TCGA	4 cut(s)	376, 447, 526, 554
TasI	AATT	4 cut(s)	60, 231, 345, 611
TfiI	GAWTC	4 cut(s)	122, 449, 551, 558
Tru1I	TTAA	5 cut(s)	156, 344, 914, 920, 1013
Tru9I	TTAA	5 cut(s)	156, 344, 914, 920, 1013
TscAI	CASTG	2 cut(s)	799, 1009
TseI	GCWGC	1 cut(s)	946
TspDTI	ATGAA	3 cut(s)	17, 80, 420
TspRI	CASTG	2 cut(s)	799, 1009
VpaK11BI	GGWCC	1 cut(s)	616
XceI	RCATGY	1 cut(s)	854
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XhoI	CTCGAG	1 cut(s)	525
XmaJI	CCTAGG	1 cut(s)	844
XspI	CTAG	3 cut(s)	776, 845, 1035
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.