Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

83704555 .. 83704821

Gene Structure 267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35240

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAGCAATGGCTCTCTAGCGAGCTTCCTCTTTGGAGAGTCAAGGCCAAACTGGAATAGCAGAAGCCAAATTGCATTAGGAGTTTCTGAGGGGCTCTTTTATTTGCATGAGTGCAGCAGCCAAATCGTACATTGCGACATTAAGCCTCAAAACATTCTTCTAGATGACTCCTTCACAGCAAGAATCTCCAACTTTGGATTAGCCGAGCTTTTGAGAACGGACCAGACTCCAACCACAACAGAATCAGGGGAACAAGAGGGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

88

Amino Acids

9.7

Weight (kDa)

4.56

Isoelectric Point (pI)

63.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 81	2.4e-11	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 80	1.3e-13	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	129
AluBI	AGCT	2 cut(s)	24, 208
AluI	AGCT	2 cut(s)	24, 208
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	2 cut(s)	114, 117
AspS9I	GGNCC	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	126, 129
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BfaI	CTAG	2 cut(s)	17, 161
BisI	GCNGC	2 cut(s)	115, 118
BlsI	GCNGC	2 cut(s)	116, 119
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	56
Bse3DI	GCAATG	2 cut(s)	13, 130
BseMI	GCAATG	2 cut(s)	13, 130
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	56
BseXI	GCAGC	2 cut(s)	126, 129
BsgI	GTGCAG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	79
BsrDI	GCAATG	2 cut(s)	13, 130
BsrI	ACTGG	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	87
BstV1I	GCAGC	2 cut(s)	126, 129
BsuRI	GGCC	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	9 cut(s)	12, 24, 46, 66, 94, 120, 145, 203, 208
CviKI_1	RGCY	9 cut(s)	12, 24, 46, 66, 94, 120, 145, 203, 208
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	1 cut(s)	110
FaiI	YATR	2 cut(s)	108, 263
FatI	CATG	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	115, 118
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	115, 118
FspBI	CTAG	2 cut(s)	17, 161
GluI	GCNGC	2 cut(s)	115, 118
HaeIII	GGCC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	110
HinfI	GANTC	5 cut(s)	38, 167, 183, 226, 242
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	181
HpyCH4V	TGCA	3 cut(s)	74, 106, 114
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	110
LpnPI	CCDG	3 cut(s)	37, 231, 236
Lsp1109I	GCAGC	2 cut(s)	126, 129
MaeI	CTAG	2 cut(s)	17, 161
MboII	GAAGA	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	3 cut(s)	47, 161, 220
MmeI	TCCRAC	2 cut(s)	213, 254
MnlI	CCTC	4 cut(s)	38, 82, 156, 250
MseI	TTAA	1 cut(s)	141
NlaIII	CATG	1 cut(s)	110
NmeAIII	GCCGAG	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	183, 242
PkrI	GCNGC	2 cut(s)	116, 119
PleI	GAGTC	3 cut(s)	46, 161, 220
PpsI	GAGTC	3 cut(s)	46, 161, 220
PspPI	GGNCC	1 cut(s)	220
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	115, 118
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	3 cut(s)	47, 161, 220
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	2 cut(s)	26, 210
SinI	GGWCC	1 cut(s)	220
Sse9I	AATT	1 cut(s)	69
SspMI	CTAG	2 cut(s)	17, 161
TasI	AATT	1 cut(s)	69
TfiI	GAWTC	2 cut(s)	183, 242
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseI	GCWGC	2 cut(s)	114, 117
TspGWI	ACGGA	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	220
XbaI	TCTAGA	1 cut(s)	160
XspI	CTAG	2 cut(s)	17, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.