Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

84559729 .. 84560102

Gene Structure 374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35326

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGATGAATCAGAGCCAAACTCAAACTGCCATAAGAGGAACAAAAGGGTATGTTGCACCTGAGTGGTTCCTGAACCTGCCAATCACTACCAAAGTCGATGTGTACAGCTTTGGTGTGGTGCTGCTAGAGGTCATTTGCTGCAGGAGAAGCGTTGATATGGAAAATTTTTCCGAAGAGAGAGCCATTTTAACTGATTGGTTTATGACCGCTACCTCGAAGGAGTCTGGGATACGATTGTTGACAACGAAATGGAGGCCTTGCATGAGAAAACAAAGCTGGAAAGGTTTGTCATGGTTGCTGTTTGGTGCATTCAAGAAGACCCTATTCTTCGACCCACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

113

Amino Acids

13.14

Weight (kDa)

9.37

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 58	8.2e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	8 - 47	6.2e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	84
AciI	CCGC	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	163
AfaI	GTAC	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	313
AleI	CACNNNNGTG	1 cut(s)	61
AluBI	AGCT	2 cut(s)	108, 276
AluI	AGCT	2 cut(s)	108, 276
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	2 cut(s)	121, 138
ApoI	RAATTY	1 cut(s)	163
BaeI	ACNNNNGTAYC	2 cut(s)	221, 254
BbsI	GAAGAC	1 cut(s)	323
BbvI	GCAGC	2 cut(s)	108, 125
BciVI	GTATCC	1 cut(s)	222
BfaI	CTAG	1 cut(s)	125
BfmI	CTRYAG	1 cut(s)	139
BfuAI	ACCTGC	1 cut(s)	84
BfuI	GTATCC	1 cut(s)	222
BisI	GCNGC	2 cut(s)	122, 139
BlsI	GCNGC	2 cut(s)	123, 140
BmiI	GGNNCC	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	323
BplI	GAGNNNNNCTC	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	108, 125
BshFI	GGCC	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	256
Bsp1407I	TGTACA	1 cut(s)	102
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	68
BspMAI	CTGCAG	1 cut(s)	143
BspMI	ACCTGC	1 cut(s)	84
BsrGI	TGTACA	1 cut(s)	102
Bst6I	CTCTTC	1 cut(s)	168
BstAUI	TGTACA	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	139
BstV1I	GCAGC	2 cut(s)	108, 125
BstV2I	GAAGAC	1 cut(s)	323
BsuI	GTATCC	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	256
BveI	ACCTGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	262, 291
CviJI	RGCY	5 cut(s)	15, 108, 182, 256, 276
CviKI_1	RGCY	5 cut(s)	15, 108, 182, 256, 276
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	256
FaeI	CATG	2 cut(s)	265, 294
FaiI	YATR	7 cut(s)	32, 51, 158, 203, 263, 292, 340
FatI	CATG	2 cut(s)	261, 290
Fnu4HI	GCNGC	2 cut(s)	122, 139
Fsp4HI	GCNGC	2 cut(s)	122, 139
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	2 cut(s)	122, 139
HaeIII	GGCC	1 cut(s)	256
Hin1II	CATG	2 cut(s)	265, 294
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HinfI	GANTC	2 cut(s)	7, 221
Hpy166II	GTNNAC	2 cut(s)	103, 240
Hpy188I	TCNGA	2 cut(s)	12, 172
Hpy188III	TCNNGA	2 cut(s)	70, 313
Hpy8I	GTNNAC	2 cut(s)	103, 240
HpyAV	CCTTC	1 cut(s)	211
HpyCH4V	TGCA	4 cut(s)	56, 141, 261, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	265, 294
LpnPI	CCDG	6 cut(s)	72, 83, 89, 127, 210, 262
Lsp1109I	GCAGC	2 cut(s)	108, 125
MaeI	CTAG	1 cut(s)	125
MboII	GAAGA	3 cut(s)	185, 319, 328
MluCI	AATT	1 cut(s)	163
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	4 cut(s)	29, 121, 223, 246
MseI	TTAA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	61
Mva1269I	GAATGC	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	147
NlaIII	CATG	2 cut(s)	265, 294
NlaIV	GGNNCC	1 cut(s)	68
OliI	CACNNNNGTG	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	256
PctI	GAATGC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	123, 140
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	68
PstI	CTGCAG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	2 cut(s)	122, 139
SchI	GAGTC	1 cut(s)	230
SetI	ASST	7 cut(s)	61, 78, 110, 132, 215, 278, 286
SfcI	CTRYAG	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	61
Sse9I	AATT	1 cut(s)	163
SseBI	AGGCCT	1 cut(s)	256
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	1 cut(s)	125
StuI	AGGCCT	1 cut(s)	256
TaqI	TCGA	3 cut(s)	96, 215, 330
TasI	AATT	1 cut(s)	163
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TseI	GCWGC	2 cut(s)	121, 138
TspDTI	ATGAA	1 cut(s)	20
XapI	RAATTY	1 cut(s)	163
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.