RchiOBHm_Chr5g0079571

NB-ARC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
85315991 .. 85316361
371 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35396

Sequence Viewer

Length: 300 bp
ATGGTTAGTCAATTTATGCATTGTCCTAGTGAAGAGCATATGAATGCAGTGTATCGTATTCTGAGATATCTTAAAATGGCACCTGGAAAAGGTTTGTTGTTCAAAAAGAAGGATGAATTGGAAGTTGTGGGGTACATTGATGCAGATTGGGCCGGTGATAAGACTGACAGACGGTCTACATCTGGGTATTTTACATTTGTTGGAGGAAACCTTGTGACTTGGCGTAGTAAGAAACAGAAGGTTGTTGCTAGGTCGAGTGCTGAAGCTGAGTTCCGAGAAACCTATGGACTTTCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC RVT_2 TIR

Protein Analysis

99

Amino Acids

11.33

Weight (kDa)

9.3

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AccI GTMKAC 1 cut(s) 176
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 103
AhdI GACNNNNNGTC 1 cut(s) 172
AjnI CCWGG 1 cut(s) 82
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
AoxI GGCC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 167
BanI GGYRCC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 84
BfaI CTAG 2 cut(s) 27, 249
Bme1390I CCNGG 1 cut(s) 84
BmeRI GACNNNNNGTC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse118I RCCGGY 1 cut(s) 152
BseBI CCWGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMII CTCAG 2 cut(s) 53, 258
BshFI GGCC 1 cut(s) 152
BshNI GGYRCC 1 cut(s) 79
BsiSI CCGG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 89
BsmI GAATGC 1 cut(s) 49
BsnI GGCC 1 cut(s) 152
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 2 cut(s) 54, 259
BspLI GGNNCC 1 cut(s) 81
BspQI GCTCTTC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 2 cut(s) 174, 297
Bst6I CTCTTC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 62, 267
BstENI CCTNNNNNAGG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 82
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 1 cut(s) 118
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 2 cut(s) 54, 293
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 133
CviJI RGCY 2 cut(s) 152, 266
CviKI_1 RGCY 2 cut(s) 152, 266
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 62, 267
DriI GACNNNNNGTC 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 27
Eam1105I GACNNNNNGTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 27
Eco32I GATATC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 282
EcoNI CCTNNNNNAGG 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 82
EcoRV GATATC 1 cut(s) 68
EcoT22I ATGCAT 1 cut(s) 21
FaiI YATR 4 cut(s) 17, 39, 41, 285
FauNDI CATATG 1 cut(s) 39
FblI GTMKAC 1 cut(s) 176
FokI GGATG 1 cut(s) 125
FspBI CTAG 2 cut(s) 27, 249
HaeIII GGCC 1 cut(s) 152
HapII CCGG 1 cut(s) 153
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 2 cut(s) 63, 275
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 2 cut(s) 103, 232
HpyCH4III ACNGT 2 cut(s) 174, 297
HpyCH4V TGCA 3 cut(s) 19, 47, 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 2 cut(s) 62, 267
LguI GCTCTTC 1 cut(s) 27
LpnPI CCDG 4 cut(s) 69, 96, 166, 168
LweI GCATC 1 cut(s) 130
MaeI CTAG 2 cut(s) 27, 249
MaeIII GTNAC 1 cut(s) 214
MboII GAAGA 1 cut(s) 44
MluCI AATT 2 cut(s) 11, 116
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 1 cut(s) 197
Mph1103I ATGCAT 1 cut(s) 21
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 42
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 49
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 149
NdeI CATATG 1 cut(s) 39
NlaIV GGNNCC 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 214
NsiI ATGCAT 1 cut(s) 21
PciSI GCTCTTC 1 cut(s) 27
PctI GAATGC 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 1 cut(s) 150
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 72
Sau96I GGNCC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 84
SetI ASST 7 cut(s) 85, 94, 213, 243, 254, 268, 284
SfaNI GCATC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 42
Sse9I AATT 2 cut(s) 11, 116
SspMI CTAG 2 cut(s) 27, 249
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 2 cut(s) 174, 297
TaqI TCGA 1 cut(s) 254
TasI AATT 2 cut(s) 11, 116
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 2 cut(s) 54, 300
TseFI GTSAC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 2 cut(s) 56, 129
TspRI CASTG 2 cut(s) 54, 300
XagI CCTNNNNNAGG 1 cut(s) 87
XmiI GTMKAC 1 cut(s) 176
XspI CTAG 2 cut(s) 27, 249
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.