RchiOBHm_Chr5g0083481

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
89190914 .. 89191447
534 bp
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UTR
Exon/CDS
Intron
PRQ35763

Sequence Viewer

Length: 534 bp
ATGAAATCTTTCTGGATTCATGTTCATCTTGAGAGCCACAACCTTGCTTTTAATGATTTCAATTCCTCTCAAATTCCTCCTACTGTTATGAACTTTCCAAAGCTCAGGTATCTAAACCTCTCTTACTCTGGCTTTTCTGGTCAAGTCCCGTCTGAAGTTTCACAATTGACTAAGTTGTCATCCCTTGATCTATCTAACAATAGTGATATGTTTTCAAATGAAGAATTGTTAAGAAGCCTAGCTCAAAATTTAACTGGCCTAGAAACACTTGGTATTTCTTTCATTGATATATCATCCACAGTACCTAATACCTTGGCCAATTTGTCACATTTGACATCCCTCACCCTAAGAGGACGTGGCATGTTCAGCAAGTTACCATTTTCTCTTGGTAATCTCAGAAATCTCATCTTTTTGGACCTTTCATATAATGAGTTCAATGGCCAAATTCCTTCTTCATTTGCAAATCTTACCCAACTTACATATTTTTCACTTGTGGGGAACTATATTAGCGGCACAATCCCATGGTCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

177

Amino Acids

19.77

Weight (kDa)

6.03

Isoelectric Point (pI)

28.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 29 - 115 2.6e-07 Leucine-rich repeat region
LRR_14 PF23598 103 - 162 1.7e-07 Leucine-rich repeat region
LRR_8 PF13855 129 - 169 8.1e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 175
AciI CCGC 1 cut(s) 510
AcoI YGGCCR 2 cut(s) 315, 439
AcsI RAATTY 3 cut(s) 72, 247, 444
AcuI CTGAAG 1 cut(s) 174
AfaI GTAC 1 cut(s) 303
AgsI TTSAA 3 cut(s) 61, 216, 436
AjiI CACGTC 1 cut(s) 356
AluBI AGCT 2 cut(s) 103, 242
AluI AGCT 2 cut(s) 103, 242
AoxI GGCC 3 cut(s) 256, 315, 439
ApoI RAATTY 3 cut(s) 72, 247, 444
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 415
AsuHPI GGTGA 1 cut(s) 334
AvaII GGWCC 1 cut(s) 415
BalI TGGCCA 2 cut(s) 317, 441
BfaI CTAG 2 cut(s) 239, 260
BisI GCNGC 1 cut(s) 511
BlsI GCNGC 1 cut(s) 512
Bme18I GGWCC 1 cut(s) 415
BmgBI CACGTC 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 415
Bpu10I CCTNAGC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 312, 521
Bse1I ACTGG 1 cut(s) 259
BseDI CCNNGG 2 cut(s) 312, 521
BseGI GGATG 3 cut(s) 179, 293, 335
BseMII CTCAG 2 cut(s) 118, 409
BseNI ACTGG 1 cut(s) 259
BshFI GGCC 3 cut(s) 258, 317, 441
BslFI GGGAC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 3 cut(s) 258, 317, 441
Bsp143I GATC 1 cut(s) 187
Bsp19I CCATGG 1 cut(s) 521
BspACI CCGC 1 cut(s) 510
BspANI GGCC 3 cut(s) 258, 317, 441
BspCNI CTCAG 2 cut(s) 117, 408
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 2 cut(s) 312, 521
BssMI GATC 1 cut(s) 187
BssT1I CCWWGG 2 cut(s) 312, 521
Bst4CI ACNGT 2 cut(s) 85, 301
BstDEI CTNAG 4 cut(s) 104, 171, 347, 395
BstDSI CCRYGG 1 cut(s) 521
BstF5I GGATG 3 cut(s) 179, 293, 335
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 366
BstNSI RCATGY 1 cut(s) 364
BsuRI GGCC 3 cut(s) 258, 317, 441
BtgI CCRYGG 1 cut(s) 521
BtrI CACGTC 1 cut(s) 356
BtsCI GGATG 3 cut(s) 179, 293, 335
Cfr13I GGNCC 1 cut(s) 415
Csp6I GTAC 1 cut(s) 302
CviAII CATG 3 cut(s) 20, 361, 522
CviJI RGCY 8 cut(s) 36, 103, 132, 237, 242, 258, 317, 441
CviKI_1 RGCY 8 cut(s) 36, 103, 132, 237, 242, 258, 317, 441
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 4 cut(s) 104, 171, 347, 395
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
DrdI GACNNNNNNGTC 1 cut(s) 175
DseDI GACNNNNNNGTC 1 cut(s) 175
EaeI YGGCCR 2 cut(s) 315, 439
Eco130I CCWWGG 2 cut(s) 312, 521
Eco47I GGWCC 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 174
EcoT14I CCWWGG 2 cut(s) 312, 521
ErhI CCWWGG 2 cut(s) 312, 521
FaeI CATG 3 cut(s) 23, 364, 525
FaqI GGGAC 1 cut(s) 131
FatI CATG 3 cut(s) 19, 360, 521
Fnu4HI GCNGC 1 cut(s) 511
FokI GGATG 3 cut(s) 166, 280, 322
Fsp4HI GCNGC 1 cut(s) 511
FspBI CTAG 2 cut(s) 239, 260
GluI GCNGC 1 cut(s) 511
HaeIII GGCC 3 cut(s) 258, 317, 441
Hin1II CATG 3 cut(s) 23, 364, 525
HinfI GANTC 1 cut(s) 16
HphI GGTGA 1 cut(s) 334
Hpy188I TCNGA 3 cut(s) 154, 398, 533
Hpy188III TCNNGA 2 cut(s) 13, 29
HpyAV CCTTC 1 cut(s) 459
HpyCH4III ACNGT 2 cut(s) 85, 301
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 1 cut(s) 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 366
HpyF3I CTNAG 4 cut(s) 104, 171, 347, 395
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 3 cut(s) 23, 364, 525
Kzo9I GATC 1 cut(s) 187
LpnPI CCDG 4 cut(s) 91, 114, 123, 240
MaeI CTAG 2 cut(s) 239, 260
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 2 cut(s) 324, 372
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 2 cut(s) 233, 444
MfeI CAATTG 1 cut(s) 164
MlsI TGGCCA 2 cut(s) 317, 441
MluCI AATT 7 cut(s) 61, 72, 164, 224, 247, 319, 444
MluNI TGGCCA 2 cut(s) 317, 441
MnlI CCTC 5 cut(s) 76, 87, 128, 344, 350
Mox20I TGGCCA 2 cut(s) 317, 441
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 2 cut(s) 317, 441
MseI TTAA 3 cut(s) 51, 230, 251
Msp20I TGGCCA 2 cut(s) 317, 441
MunI CAATTG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 366
NcoI CCATGG 1 cut(s) 521
NdeII GATC 1 cut(s) 187
NlaIII CATG 3 cut(s) 23, 364, 525
NmuCI GTSAC 1 cut(s) 324
NspI RCATGY 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 16
PkrI GCNGC 1 cut(s) 512
PspPI GGNCC 1 cut(s) 415
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
SaqAI TTAA 3 cut(s) 51, 230, 251
SatI GCNGC 1 cut(s) 511
Sau3AI GATC 1 cut(s) 187
Sau96I GGNCC 1 cut(s) 415
SetI ASST 9 cut(s) 45, 105, 110, 120, 244, 307, 314, 358, 420
SinI GGWCC 1 cut(s) 415
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 7 cut(s) 61, 72, 164, 224, 247, 319, 444
SsiI CCGC 1 cut(s) 510
SspMI CTAG 2 cut(s) 239, 260
StyI CCWWGG 2 cut(s) 312, 521
TaaI ACNGT 2 cut(s) 85, 301
TaiI ACGT 1 cut(s) 358
TasI AATT 7 cut(s) 61, 72, 164, 224, 247, 319, 444
TauI GCSGC 1 cut(s) 513
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 3 cut(s) 51, 230, 251
Tru9I TTAA 3 cut(s) 51, 230, 251
TseFI GTSAC 1 cut(s) 324
Tsp45I GTSAC 1 cut(s) 324
TspDTI ATGAA 8 cut(s) 8, 14, 17, 104, 234, 271, 411, 444
VpaK11BI GGWCC 1 cut(s) 415
XapI RAATTY 3 cut(s) 72, 247, 444
XceI RCATGY 1 cut(s) 364
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 239, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.