RchiOBHm_Chr6g0248761

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
4660105 .. 4665329
5225 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22298

Sequence Viewer

Length: 459 bp
ATGGAGTTGGACAGAATTAGCAGTTTACCAAATGATGTCACAGAAAAGATTTTGTCACGTTTGCCGCTTAGGGAAGCAGTGAGGACACGTGTTTTATCCAGCAAGTGGAGGTACAAATCAGAAATGCTTCAAGATCTAGTGCTCACTATAAACAGGAACTTTTTAAAGTATTTGTTTATCGGTGCATTGCCAGAAAAGCTTCCCAAACCATGTCAATATATGAATTTTCTTTCTGTCAACATAAGCTTCGATGATTCGGATGAAATTTCAACTGTACTATGCCTTCTGAGTAGCTCCCCTGCTCTACGAGAACTAGAAATTTTGGTGGACCCTGAAAAGGGTCACGCTGCTATGGGAGAAGTGAAATCTTGTTTATATGACAACTACGATTGCACACACACTCAATTGCGGCTTGTGAAAATAACCAAGATCTCCTGTATGGTTTTTCAAAGCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

152

Amino Acids

17.5

Weight (kDa)

6.72

Isoelectric Point (pI)

56.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 40 6e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 105
AciI CCGC 2 cut(s) 65, 409
AcsI RAATTY 3 cut(s) 223, 264, 318
AcvI CACGTG 1 cut(s) 89
AfaI GTAC 2 cut(s) 113, 276
AfiI CCNNNNNNNGG 3 cut(s) 105, 337, 338
AflIII ACRYGT 2 cut(s) 86, 88
AgsI TTSAA 3 cut(s) 131, 270, 449
AluBI AGCT 4 cut(s) 199, 246, 294, 453
AluI AGCT 4 cut(s) 199, 246, 294, 453
Alw21I GWGCWC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 347
ApoI RAATTY 3 cut(s) 223, 264, 318
Asp700I GAANNNNTTC 2 cut(s) 126, 198
AspS9I GGNCC 1 cut(s) 328
AvaII GGWCC 1 cut(s) 328
BarI GAAGNNNNNNTAC 2 cut(s) 267, 299
BbrPI CACGTG 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 334
BfaI CTAG 2 cut(s) 137, 314
BglII AGATCT 2 cut(s) 133, 429
BisI GCNGC 3 cut(s) 65, 348, 410
BlsI GCNGC 3 cut(s) 66, 349, 411
Bme18I GGWCC 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 1 cut(s) 330
Bpu10I CCTNAGC 1 cut(s) 68
BsaAI YACGTR 1 cut(s) 89
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 337, 338
Bse3DI GCAATG 1 cut(s) 185
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 3 cut(s) 105, 337, 338
BseMI GCAATG 1 cut(s) 185
BseMII CTCAG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 144
BslI CCNNNNNNNGG 3 cut(s) 105, 337, 338
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 2 cut(s) 133, 429
BspACI CCGC 2 cut(s) 65, 409
BspCNI CTCAG 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 330
BsrDI GCAATG 1 cut(s) 185
BssMI GATC 2 cut(s) 133, 429
Bst4CI ACNGT 1 cut(s) 274
BstBAI YACGTR 1 cut(s) 89
BstDEI CTNAG 2 cut(s) 68, 287
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 2 cut(s) 136, 432
BstMBI GATC 2 cut(s) 133, 429
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 334
BstX2I RGATCY 2 cut(s) 133, 429
BstYI RGATCY 2 cut(s) 133, 429
BtsCI GGATG 1 cut(s) 265
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 328
Csp6I GTAC 2 cut(s) 112, 275
CviAII CATG 1 cut(s) 210
CviJI RGCY 5 cut(s) 199, 246, 294, 412, 453
CviKI_1 RGCY 5 cut(s) 199, 246, 294, 412, 453
CviQI GTAC 2 cut(s) 112, 275
DdeI CTNAG 2 cut(s) 68, 287
DpnI GATC 2 cut(s) 135, 431
DpnII GATC 2 cut(s) 133, 429
DraI TTTAAA 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 328
Eco72I CACGTG 1 cut(s) 89
FaeI CATG 1 cut(s) 213
FatI CATG 1 cut(s) 209
Fnu4HI GCNGC 3 cut(s) 65, 348, 410
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 3 cut(s) 65, 348, 410
FspBI CTAG 2 cut(s) 137, 314
GluI GCNGC 3 cut(s) 65, 348, 410
Hin1II CATG 1 cut(s) 213
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 2 cut(s) 197, 244
HinfI GANTC 1 cut(s) 254
Hpy166II GTNNAC 3 cut(s) 26, 238, 328
Hpy188I TCNGA 3 cut(s) 121, 259, 288
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 3 cut(s) 26, 238, 328
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 2 cut(s) 58, 88
HpyCH4V TGCA 2 cut(s) 185, 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 2 cut(s) 68, 287
HpySE526I ACGT 2 cut(s) 58, 88
Hsp92II CATG 1 cut(s) 213
Kzo9I GATC 2 cut(s) 133, 429
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 6 cut(s) 112, 139, 204, 312, 345, 448
Lsp1109I GCAGC 1 cut(s) 334
MaeI CTAG 2 cut(s) 137, 314
MaeII ACGT 2 cut(s) 58, 88
MaeIII GTNAC 3 cut(s) 37, 54, 341
MalI GATC 2 cut(s) 135, 431
MboI GATC 2 cut(s) 133, 429
MfeI CAATTG 1 cut(s) 404
MflI RGATCY 2 cut(s) 133, 429
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 5 cut(s) 15, 223, 264, 318, 404
MnlI CCTC 2 cut(s) 75, 102
MroXI GAANNNNTTC 2 cut(s) 126, 198
MseI TTAA 2 cut(s) 164, 457
MunI CAATTG 1 cut(s) 404
MwoI GCNNNNNNNGC 1 cut(s) 196
NdeII GATC 2 cut(s) 133, 429
NlaIII CATG 1 cut(s) 213
NlaIV GGNNCC 1 cut(s) 330
NmuCI GTSAC 3 cut(s) 37, 54, 341
PdmI GAANNNNTTC 2 cut(s) 126, 198
PfeI GAWTC 1 cut(s) 254
PflMI CCANNNNNTGG 1 cut(s) 105
PkrI GCNGC 3 cut(s) 66, 349, 411
PmaCI CACGTG 1 cut(s) 89
PmlI CACGTG 1 cut(s) 89
Ppu21I YACGTR 1 cut(s) 89
PspCI CACGTG 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 1 cut(s) 328
PsuI RGATCY 2 cut(s) 133, 429
RsaI GTAC 2 cut(s) 113, 276
RsaNI GTAC 2 cut(s) 112, 275
SaqAI TTAA 2 cut(s) 164, 457
SatI GCNGC 3 cut(s) 65, 348, 410
Sau3AI GATC 2 cut(s) 133, 429
Sau96I GGNCC 1 cut(s) 328
SduI GDGCHC 1 cut(s) 144
SetI ASST 7 cut(s) 61, 91, 113, 201, 248, 296, 455
SinI GGWCC 1 cut(s) 328
Sse9I AATT 5 cut(s) 15, 223, 264, 318, 404
SsiI CCGC 2 cut(s) 65, 409
SspMI CTAG 2 cut(s) 137, 314
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 2 cut(s) 61, 91
TaqI TCGA 1 cut(s) 249
TasI AATT 5 cut(s) 15, 223, 264, 318, 404
TatI WGTACW 1 cut(s) 274
TauI GCSGC 2 cut(s) 67, 412
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 2 cut(s) 164, 457
Tru9I TTAA 2 cut(s) 164, 457
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 3 cut(s) 37, 54, 341
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 3 cut(s) 37, 54, 341
TspDTI ATGAA 2 cut(s) 236, 276
TspRI CASTG 1 cut(s) 84
Van91I CCANNNNNTGG 1 cut(s) 105
VpaK11BI GGWCC 1 cut(s) 328
XapI RAATTY 3 cut(s) 223, 264, 318
XmnI GAANNNNTTC 2 cut(s) 126, 198
XspI CTAG 2 cut(s) 137, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.