Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4952584 .. 4953755

Gene Structure 1172 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22331

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAATGTGTTTTCATTCTCTGCCACTCAGCATATGTGTGTATGTTTGACCTATGTTGCATCACCAGGTTTCTGTTGCTTGCGTGTTTTGAGAAAGGAGGAACGAGATACTGATAGATCCTCATTCTTGATCAATGGAAGCGAAGTACTAGAGGATCTCATTTTTCCTATACCAGCTCTAGTGCATGAATATGCAACAATAGGAGTGCTAAATGATGAAGGAGGTTTCGGAGCTACTGAGTCCTTAACCTGGAAAGCTAGACTAGGTAAGCAGCTTGCAAATGCTCTTACATATCTCCATACTGCCTTTCCTAGGCCCATCATTCTCCGGGATCTAAATTTTAGTTGTATTTACTTGGGCCATGATTATGTTCCCAAACTCTCCTACTTCGGGCTCTCCATAACCATCCCTCCCATGAAATCATATGCTGAAGATGAACCAAAAGGAAGATTTGGGTACTCTGACCCTGCTCACATTACATCTGGTATTATTTCAGAAAAAGGTGATGTTTATAGCTTTGGTGTGCTTTTACTTATATTTCTGACAGGACAAAAAGCTGTGGTTACCAATCAGGACGGGGAATACGAATCAATTAATTCATATGTGAAATTTCGTACTTGTAATGGTCAGATTCAGAGCTTTGTTGATCCTAAAATCTTTGGCGAGGTAGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

225

Amino Acids

25.02

Weight (kDa)

5.74

Isoelectric Point (pI)

30.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	60 - 196	9.1e-10	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	61 - 187	3.5e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	111, 162, 339, 641
AcsI	RAATTY	2 cut(s)	337, 608
AcuI	CTGAAG	1 cut(s)	450
AfaI	GTAC	3 cut(s)	147, 458, 616
AfiI	CCNNNNNNNGG	3 cut(s)	249, 312, 390
AjnI	CCWGG	2 cut(s)	64, 248
AluBI	AGCT	7 cut(s)	176, 233, 257, 274, 516, 557, 639
AluI	AGCT	7 cut(s)	176, 233, 257, 274, 516, 557, 639
AlwI	GGATC	4 cut(s)	111, 162, 339, 641
AoxI	GGCC	2 cut(s)	314, 358
ApeKI	GCWGC	1 cut(s)	271
ApoI	RAATTY	2 cut(s)	337, 608
AseI	ATTAAT	1 cut(s)	594
AspA2I	CCTAGG	1 cut(s)	311
AspS9I	GGNCC	2 cut(s)	315, 358
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	54, 515
AvrII	CCTAGG	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	396
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	2 cut(s)	326, 413
BciT130I	CCWGG	2 cut(s)	66, 250
BclI	TGATCA	1 cut(s)	129
BcnI	CCSGG	1 cut(s)	329
BfaI	CTAG	5 cut(s)	149, 179, 258, 263, 312
BisI	GCNGC	1 cut(s)	272
BlnI	CCTAGG	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	273
BmcAI	AGTACT	1 cut(s)	147
Bme1390I	CCNGG	3 cut(s)	66, 250, 329
BmgT120I	GGNCC	2 cut(s)	315, 358
BmrFI	CCNGG	3 cut(s)	66, 250, 329
BmsI	GCATC	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	311
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	3 cut(s)	249, 312, 390
BseBI	CCWGG	2 cut(s)	66, 250
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	3 cut(s)	249, 312, 390
BseMII	CTCAG	2 cut(s)	41, 228
BseXI	GCAGC	1 cut(s)	283
BshFI	GGCC	2 cut(s)	316, 360
BsiSI	CCGG	1 cut(s)	328
BslI	CCNNNNNNNGG	3 cut(s)	249, 312, 390
BsnI	GGCC	2 cut(s)	316, 360
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	5 cut(s)	116, 129, 154, 331, 646
BspANI	GGCC	2 cut(s)	316, 360
BspCNI	CTCAG	2 cut(s)	40, 229
BspPI	GGATC	4 cut(s)	111, 162, 339, 641
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	5 cut(s)	116, 129, 154, 331, 646
BssT1I	CCWWGG	1 cut(s)	311
Bst2UI	CCWGG	2 cut(s)	66, 250
BstC8I	GCNNGC	2 cut(s)	80, 276
BstDEI	CTNAG	2 cut(s)	27, 237
BstEII	GGTNACC	1 cut(s)	562
BstENI	CCTNNNNNAGG	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	405
BstKTI	GATC	5 cut(s)	119, 132, 157, 334, 649
BstMBI	GATC	5 cut(s)	116, 129, 154, 331, 646
BstNI	CCWGG	2 cut(s)	66, 250
BstPI	GGTNACC	1 cut(s)	562
BstSCI	CCNGG	3 cut(s)	64, 248, 327
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	3 cut(s)	116, 154, 331
BstYI	RGATCY	3 cut(s)	116, 154, 331
BsuRI	GGCC	2 cut(s)	316, 360
BtsCI	GGATG	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	80, 276
Cfr13I	GGNCC	2 cut(s)	315, 358
CsiI	ACCWGGT	1 cut(s)	64
Csp6I	GTAC	3 cut(s)	146, 457, 615
CviAII	CATG	3 cut(s)	185, 362, 415
CviQI	GTAC	3 cut(s)	146, 457, 615
DdeI	CTNAG	2 cut(s)	27, 237
DpnI	GATC	5 cut(s)	118, 131, 156, 333, 648
DpnII	GATC	5 cut(s)	116, 129, 154, 331, 646
Eco130I	CCWWGG	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	450
Eco91I	GGTNACC	1 cut(s)	562
EcoNI	CCTNNNNNAGG	1 cut(s)	310
EcoO65I	GGTNACC	1 cut(s)	562
EcoRII	CCWGG	2 cut(s)	64, 248
EcoT14I	CCWWGG	1 cut(s)	311
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	311
FaeI	CATG	3 cut(s)	188, 365, 418
FatI	CATG	3 cut(s)	184, 361, 414
FauNDI	CATATG	3 cut(s)	33, 424, 601
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	272
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	1 cut(s)	272
FspBI	CTAG	5 cut(s)	149, 179, 258, 263, 312
GluI	GCNGC	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	316, 360
HapII	CCGG	1 cut(s)	328
Hin1II	CATG	3 cut(s)	188, 365, 418
HinfI	GANTC	3 cut(s)	239, 587, 631
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	2 cut(s)	54, 515
Hpy188I	TCNGA	6 cut(s)	230, 463, 496, 543, 630, 636
Hpy188III	TCNNGA	2 cut(s)	127, 572
HpyAV	CCTTC	1 cut(s)	212
HpyCH4V	TGCA	4 cut(s)	59, 184, 194, 278
HpyF3I	CTNAG	2 cut(s)	27, 237
Hsp92II	CATG	3 cut(s)	188, 365, 418
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	5 cut(s)	116, 129, 154, 331, 646
LmnI	GCTCC	1 cut(s)	230
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	1 cut(s)	68
MabI	ACCWGGT	1 cut(s)	64
MaeI	CTAG	5 cut(s)	149, 179, 258, 263, 312
MaeIII	GTNAC	1 cut(s)	562
MalI	GATC	5 cut(s)	118, 131, 156, 333, 648
MboI	GATC	5 cut(s)	116, 129, 154, 331, 646
MboII	GAAGA	2 cut(s)	443, 459
MflI	RGATCY	3 cut(s)	116, 154, 331
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	4 cut(s)	337, 591, 595, 608
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	6 cut(s)	91, 130, 145, 215, 420, 658
MseI	TTAA	2 cut(s)	245, 594
MslI	CAYNNNNRTG	3 cut(s)	36, 189, 366
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	3 cut(s)	66, 250, 329
MvaI	CCWGG	2 cut(s)	66, 250
NciI	CCSGG	1 cut(s)	329
NdeI	CATATG	3 cut(s)	33, 424, 601
NdeII	GATC	5 cut(s)	116, 129, 154, 331, 646
NlaIII	CATG	3 cut(s)	188, 365, 418
PcsI	WCGNNNNNNNCGW	1 cut(s)	582
PfeI	GAWTC	2 cut(s)	587, 631
PfoI	TCCNGGA	1 cut(s)	327
PkrI	GCNGC	1 cut(s)	273
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PshBI	ATTAAT	1 cut(s)	594
Psp6I	CCWGG	2 cut(s)	64, 248
PspEI	GGTNACC	1 cut(s)	562
PspGI	CCWGG	2 cut(s)	64, 248
PspPI	GGNCC	2 cut(s)	315, 358
PsuI	RGATCY	3 cut(s)	116, 154, 331
RsaI	GTAC	3 cut(s)	147, 458, 616
RsaNI	GTAC	3 cut(s)	146, 457, 615
RseI	CAYNNNNRTG	3 cut(s)	36, 189, 366
SaqAI	TTAA	2 cut(s)	245, 594
SatI	GCNGC	1 cut(s)	272
Sau3AI	GATC	5 cut(s)	116, 129, 154, 331, 646
Sau96I	GGNCC	2 cut(s)	315, 358
ScaI	AGTACT	1 cut(s)	147
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	3 cut(s)	66, 250, 329
SduI	GDGCHC	1 cut(s)	396
SexAI	ACCWGGT	1 cut(s)	64
SfaNI	GCATC	1 cut(s)	68
SmiMI	CAYNNNNRTG	3 cut(s)	36, 189, 366
Sse9I	AATT	4 cut(s)	337, 591, 595, 608
SspMI	CTAG	5 cut(s)	149, 179, 258, 263, 312
StyD4I	CCNGG	3 cut(s)	64, 248, 327
StyI	CCWWGG	1 cut(s)	311
TasI	AATT	4 cut(s)	337, 591, 595, 608
TatI	WGTACW	1 cut(s)	145
TfiI	GAWTC	2 cut(s)	587, 631
Tru1I	TTAA	2 cut(s)	245, 594
Tru9I	TTAA	2 cut(s)	245, 594
TseI	GCWGC	1 cut(s)	271
TspDTI	ATGAA	6 cut(s)	17, 201, 231, 431, 450, 588
VspI	ATTAAT	1 cut(s)	594
XagI	CCTNNNNNAGG	1 cut(s)	310
XapI	RAATTY	2 cut(s)	337, 608
XmaJI	CCTAGG	1 cut(s)	311
XspI	CTAG	5 cut(s)	149, 179, 258, 263, 312
ZrmI	AGTACT	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.