RchiOBHm_Chr6g0252371
HSP70 Family

Belongs to the heat shock protein 70 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
7539570 .. 7541079
1510 bp
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UTR
Exon/CDS
Intron
PRQ22628

Sequence Viewer

Length: 357 bp
ATGTTAATCCTTTATTATTCTTTGATCGAGTGCATTGAGGAGGAGTTATATATCTGTGTCTACTTAAGATTGATTAGAGTTGAAGGTCATGAAAATAAGCCCAAGATTCTGATTAAACACAATGGGAAGACGAAACAGTTTGCTCCAGAAGAAATCTCATCCATGATTCTCGCAAAGATGCGTGAGACTGCTGAAGCTTACCTTGGATCACATGTAAAGAATGCAGTTATCACTGTCCCTGCTTACTTCAATAACTCACAACGTCAGGCTACGAAGAATGCTGGTCTTATTGCAGGGTTAAAAGTGATGCGAATTATTATACGAACCAACAGCTGCAGCAATTGCCTATGGCCTTGA
Functional Annotation

Protein Analysis

118

Amino Acids

13.47

Weight (kDa)

9.12

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 29 - 106 1.4e-30 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 60
AclWI GGATC 1 cut(s) 214
AcuI CTGAAG 1 cut(s) 213
AflII CTTAAG 1 cut(s) 64
AflIII ACRYGT 1 cut(s) 211
AgsI TTSAA 2 cut(s) 83, 250
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 2 cut(s) 197, 333
AluI AGCT 2 cut(s) 197, 333
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 1 cut(s) 214
AoxI GGCC 1 cut(s) 350
ApeKI GCWGC 2 cut(s) 333, 336
BbsI GAAGAC 1 cut(s) 134
BbvI GCAGC 2 cut(s) 320, 348
BcoDI GTCTC 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 334
BfrI CTTAAG 1 cut(s) 64
BisI GCNGC 2 cut(s) 334, 337
BlsI GCNGC 2 cut(s) 335, 338
BmsI GCATC 2 cut(s) 168, 297
BpiI GAAGAC 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 1 cut(s) 158
BseRI GAGGAG 2 cut(s) 53, 56
BseXI GCAGC 2 cut(s) 320, 348
BshFI GGCC 1 cut(s) 352
BslFI GGGAC 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 221
BsmI GAATGC 2 cut(s) 226, 283
BsnI GGCC 1 cut(s) 352
Bsp143I GATC 2 cut(s) 24, 206
BspANI GGCC 1 cut(s) 352
BspHI TCATGA 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 338
BspPI GGATC 1 cut(s) 214
BspTI CTTAAG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 2 cut(s) 24, 206
BssT1I CCWWGG 1 cut(s) 202
Bst4CI ACNGT 2 cut(s) 138, 235
BstAFI CTTAAG 1 cut(s) 64
BstAPI GCANNNNNTGC 1 cut(s) 342
BstF5I GGATG 1 cut(s) 158
BstKTI GATC 2 cut(s) 27, 209
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 2 cut(s) 24, 206
BstMWI GCNNNNNNNGC 1 cut(s) 342
BstNSI RCATGY 1 cut(s) 215
BstSFI CTRYAG 1 cut(s) 334
BstV1I GCAGC 2 cut(s) 320, 348
BstV2I GAAGAC 1 cut(s) 134
BsuRI GGCC 1 cut(s) 352
BtsCI GGATG 1 cut(s) 158
BtsIMutI CAGTG 1 cut(s) 231
CciI TCATGA 1 cut(s) 88
CviAII CATG 3 cut(s) 89, 163, 212
CviJI RGCY 5 cut(s) 100, 197, 269, 333, 352
CviKI_1 RGCY 5 cut(s) 100, 197, 269, 333, 352
DpnI GATC 2 cut(s) 26, 208
DpnII GATC 2 cut(s) 24, 206
Eco130I CCWWGG 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 3 cut(s) 92, 166, 215
FaiI YATR 7 cut(s) 49, 51, 90, 164, 213, 320, 349
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FaqI GGGAC 1 cut(s) 221
FatI CATG 3 cut(s) 88, 162, 211
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 2 cut(s) 334, 337
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 2 cut(s) 334, 337
GluI GCNGC 2 cut(s) 334, 337
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 1 cut(s) 352
Hin1II CATG 3 cut(s) 92, 166, 215
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 2 cut(s) 106, 166
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 2 cut(s) 89, 146
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 2 cut(s) 138, 235
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 4 cut(s) 33, 224, 293, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 3 cut(s) 92, 166, 215
Kzo9I GATC 2 cut(s) 24, 206
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 5 cut(s) 159, 251, 252, 267, 279
Lsp1109I GCAGC 2 cut(s) 320, 348
LweI GCATC 2 cut(s) 168, 297
MaeII ACGT 1 cut(s) 262
MalI GATC 2 cut(s) 26, 208
MboI GATC 2 cut(s) 24, 206
MboII GAAGA 3 cut(s) 139, 161, 286
MfeI CAATTG 1 cut(s) 340
MluCI AATT 2 cut(s) 312, 340
MnlI CCTC 2 cut(s) 31, 34
MseI TTAA 4 cut(s) 5, 65, 114, 299
MspA1I CMGCKG 1 cut(s) 333
MspCI CTTAAG 1 cut(s) 64
MunI CAATTG 1 cut(s) 340
Mva1269I GAATGC 2 cut(s) 226, 283
MwoI GCNNNNNNNGC 1 cut(s) 342
NdeII GATC 2 cut(s) 24, 206
NlaIII CATG 3 cut(s) 92, 166, 215
NspI RCATGY 1 cut(s) 215
PagI TCATGA 1 cut(s) 88
PciI ACATGT 1 cut(s) 211
PctI GAATGC 2 cut(s) 226, 283
PfeI GAWTC 2 cut(s) 106, 166
PkrI GCNGC 2 cut(s) 335, 338
PscI ACATGT 1 cut(s) 211
PstI CTGCAG 1 cut(s) 338
PvuII CAGCTG 1 cut(s) 333
SaqAI TTAA 4 cut(s) 5, 65, 114, 299
SatI GCNGC 2 cut(s) 334, 337
Sau3AI GATC 2 cut(s) 24, 206
SetI ASST 5 cut(s) 88, 199, 204, 265, 335
SfaNI GCATC 2 cut(s) 168, 297
SfcI CTRYAG 1 cut(s) 334
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
Sse9I AATT 2 cut(s) 312, 340
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 2 cut(s) 138, 235
TaiI ACGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 27
TasI AATT 2 cut(s) 312, 340
TfiI GAWTC 2 cut(s) 106, 166
Tru1I TTAA 4 cut(s) 5, 65, 114, 299
Tru9I TTAA 4 cut(s) 5, 65, 114, 299
TscAI CASTG 1 cut(s) 238
TseI GCWGC 2 cut(s) 333, 336
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 1 cut(s) 238
Vha464I CTTAAG 1 cut(s) 64
XceI RCATGY 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.