RchiOBHm_Chr6g0261261

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
16185165 .. 16187207
2043 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23429

Sequence Viewer

Length: 573 bp
ATGAAAAATCTTAAATGTTTTAAAAACAGAGATGCTCCCTGTTCTGCAGAGATGGAATCGCTCCCCAATAATTTAAGGCTTATTGATTGGCCTCACTTTCCGTTTAAAGCTTTACCATTGGATTTTGATCCAAAGAAGCTTGTTAAACTCAATATGCCTGGCAGCAGCTGCATGTTACAACTGGGGGGCACATTCAAGAGCTGCAGATATCTGAAATATATAAACTTAGAAAGCTGCTCATGCCTACAAGTGGTTCCTAGCTTGTCTGAATTCCCACAGTTACAGGAGTTGAATCTTAAAGACTGTACAAGTTTAACTGGGGTTGATGATTCTGTTGGACATCATAAAAATCTGGTTGTCTTGAGTCTTGCAGGATGCCATAACCTTACTGTGCTTCCAGGAGCAATTGCCTGGAAAAATGCGAGAGAGATAAATCTTTATCACTGTAGTAAGCTGAAAACTTTTCCGGATATTTTGGAAGAGATGGAATCCGTAACGTGCCTGGAATTATTCAAAACTGCAATCACAGATTGCCTACATCAATTCCATATCTCATTGGACTTAAATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

190

Amino Acids

21.41

Weight (kDa)

6.64

Isoelectric Point (pI)

53.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 466
AclWI GGATC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 269
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 3 cut(s) 196, 292, 514
AjnI CCWGG 4 cut(s) 157, 397, 410, 501
AluBI AGCT 7 cut(s) 110, 139, 168, 201, 234, 261, 454
AluI AGCT 7 cut(s) 110, 139, 168, 201, 234, 261, 454
AlwI GGATC 1 cut(s) 122
AlwNI CAGNNNCTG 1 cut(s) 168
Aor13HI TCCGGA 1 cut(s) 466
AoxI GGCC 1 cut(s) 89
ApeKI GCWGC 5 cut(s) 162, 165, 168, 201, 234
ApoI RAATTY 1 cut(s) 269
BaeGI GKGCMC 1 cut(s) 191
BbvI GCAGC 5 cut(s) 155, 174, 177, 188, 221
BccI CCATC 2 cut(s) 46, 478
BciT130I CCWGG 4 cut(s) 159, 399, 412, 503
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 3 cut(s) 45, 202, 445
BisI GCNGC 5 cut(s) 163, 166, 169, 202, 235
BlsI GCNGC 5 cut(s) 164, 167, 170, 203, 236
Bme1390I CCNGG 4 cut(s) 159, 399, 412, 503
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 4 cut(s) 159, 399, 412, 503
BmrI ACTGGG 2 cut(s) 191, 327
BmsI GCATC 2 cut(s) 22, 365
BmuI ACTGGG 2 cut(s) 191, 327
BpuEI CTTGAG 1 cut(s) 382
BsaBI GATNNNNATC 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 466
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse1I ACTGG 2 cut(s) 186, 322
Bse8I GATNNNNATC 1 cut(s) 126
BseAI TCCGGA 1 cut(s) 466
BseBI CCWGG 4 cut(s) 159, 399, 412, 503
BseGI GGATG 1 cut(s) 380
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 250
BseNI ACTGG 2 cut(s) 186, 322
BseSI GKGCMC 1 cut(s) 191
BseXI GCAGC 5 cut(s) 155, 174, 177, 188, 221
BshFI GGCC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 467
BslI CCNNNNNNNGG 1 cut(s) 250
BsnI GGCC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 191
Bsp13I TCCGGA 1 cut(s) 466
Bsp1407I TGTACA 1 cut(s) 305
Bsp143I GATC 1 cut(s) 127
BspANI GGCC 1 cut(s) 91
BspEI TCCGGA 1 cut(s) 466
BspLI GGNNCC 1 cut(s) 255
BspMAI CTGCAG 2 cut(s) 49, 206
BspPI GGATC 1 cut(s) 122
BsrGI TGTACA 1 cut(s) 305
BsrI ACTGG 2 cut(s) 186, 322
BssMI GATC 1 cut(s) 127
Bst2UI CCWGG 4 cut(s) 159, 399, 412, 503
Bst4CI ACNGT 4 cut(s) 279, 305, 391, 446
Bst6I CTCTTC 1 cut(s) 474
BstAPI GCANNNNNTGC 1 cut(s) 168
BstAUI TGTACA 1 cut(s) 305
BstDEI CTNAG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 380
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 168, 240
BstNI CCWGG 4 cut(s) 159, 399, 412, 503
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 4 cut(s) 157, 397, 410, 501
BstSFI CTRYAG 3 cut(s) 45, 202, 445
BstSLI GKGCMC 1 cut(s) 191
BstV1I GCAGC 5 cut(s) 155, 174, 177, 188, 221
BsuRI GGCC 1 cut(s) 91
BtsCI GGATG 1 cut(s) 380
BtsIMutI CAGTG 1 cut(s) 442
CaiI CAGNNNCTG 1 cut(s) 168
Csp6I GTAC 1 cut(s) 306
CviAII CATG 2 cut(s) 172, 240
CviJI RGCY 9 cut(s) 79, 91, 110, 139, 168, 201, 234, 261, 454
CviKI_1 RGCY 9 cut(s) 79, 91, 110, 139, 168, 201, 234, 261, 454
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 1 cut(s) 226
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
DraI TTTAAA 2 cut(s) 22, 106
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Eco32I GATATC 1 cut(s) 209
EcoRI GAATTC 1 cut(s) 269
EcoRII CCWGG 4 cut(s) 157, 397, 410, 501
EcoRV GATATC 1 cut(s) 209
FaeI CATG 2 cut(s) 175, 243
FaiI YATR 8 cut(s) 155, 173, 219, 221, 241, 345, 381, 549
FatI CATG 2 cut(s) 171, 239
Fnu4HI GCNGC 5 cut(s) 163, 166, 169, 202, 235
FokI GGATG 1 cut(s) 387
Fsp4HI GCNGC 5 cut(s) 163, 166, 169, 202, 235
FspBI CTAG 1 cut(s) 258
GluI GCNGC 5 cut(s) 163, 166, 169, 202, 235
HaeIII GGCC 1 cut(s) 91
HapII CCGG 1 cut(s) 467
Hin1II CATG 2 cut(s) 175, 243
HindIII AAGCTT 2 cut(s) 108, 137
HinfI GANTC 5 cut(s) 56, 292, 329, 364, 488
HpaII CCGG 1 cut(s) 467
Hpy188I TCNGA 2 cut(s) 213, 268
Hpy188III TCNNGA 3 cut(s) 196, 361, 467
HpyCH4III ACNGT 4 cut(s) 279, 305, 391, 446
HpyCH4IV ACGT 1 cut(s) 497
HpyCH4V TGCA 5 cut(s) 47, 171, 204, 371, 521
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 240
HpyF3I CTNAG 1 cut(s) 226
HpySE526I ACGT 1 cut(s) 497
Hsp92II CATG 2 cut(s) 175, 243
Kpn2I TCCGGA 1 cut(s) 466
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 3 cut(s) 40, 66, 401
Lsp1109I GCAGC 5 cut(s) 155, 174, 177, 188, 221
LweI GCATC 2 cut(s) 22, 365
MaeI CTAG 1 cut(s) 258
MaeII ACGT 1 cut(s) 497
MaeIII GTNAC 3 cut(s) 174, 279, 493
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 1 cut(s) 491
MfeI CAATTG 1 cut(s) 405
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 5 cut(s) 70, 269, 405, 506, 542
MlyI GAGTC 1 cut(s) 373
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 1 cut(s) 102
MroI TCCGGA 1 cut(s) 466
MseI TTAA 8 cut(s) 12, 21, 74, 105, 144, 297, 314, 563
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 4 cut(s) 159, 399, 412, 503
MunI CAATTG 1 cut(s) 405
MvaI CCWGG 4 cut(s) 159, 399, 412, 503
MwoI GCNNNNNNNGC 2 cut(s) 168, 240
NdeII GATC 1 cut(s) 127
NlaIII CATG 2 cut(s) 175, 243
NlaIV GGNNCC 1 cut(s) 255
NspI RCATGY 1 cut(s) 175
PfeI GAWTC 4 cut(s) 56, 292, 329, 488
PfoI TCCNGGA 1 cut(s) 397
PkrI GCNGC 5 cut(s) 164, 167, 170, 203, 236
PleI GAGTC 1 cut(s) 372
PpsI GAGTC 1 cut(s) 372
Psp6I CCWGG 4 cut(s) 157, 397, 410, 501
PspGI CCWGG 4 cut(s) 157, 397, 410, 501
PspN4I GGNNCC 1 cut(s) 255
PstI CTGCAG 2 cut(s) 49, 206
PstNI CAGNNNCTG 1 cut(s) 168
PvuII CAGCTG 1 cut(s) 168
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
SaqAI TTAA 8 cut(s) 12, 21, 74, 105, 144, 297, 314, 563
SatI GCNGC 5 cut(s) 163, 166, 169, 202, 235
Sau3AI GATC 1 cut(s) 127
SchI GAGTC 1 cut(s) 373
ScrFI CCNGG 4 cut(s) 159, 399, 412, 503
SduI GDGCHC 1 cut(s) 191
SetI ASST 9 cut(s) 112, 141, 170, 203, 236, 263, 387, 456, 500
SfaNI GCATC 2 cut(s) 22, 365
SfcI CTRYAG 3 cut(s) 45, 202, 445
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 5 cut(s) 70, 269, 405, 506, 542
SspI AATATT 1 cut(s) 568
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 4 cut(s) 157, 397, 410, 501
TaaI ACNGT 4 cut(s) 279, 305, 391, 446
TaiI ACGT 1 cut(s) 500
TasI AATT 5 cut(s) 70, 269, 405, 506, 542
TatI WGTACW 1 cut(s) 305
TfiI GAWTC 4 cut(s) 56, 292, 329, 488
Tru1I TTAA 8 cut(s) 12, 21, 74, 105, 144, 297, 314, 563
Tru9I TTAA 8 cut(s) 12, 21, 74, 105, 144, 297, 314, 563
TscAI CASTG 1 cut(s) 449
TseI GCWGC 5 cut(s) 162, 165, 168, 201, 234
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 90, 481
TspRI CASTG 1 cut(s) 449
XapI RAATTY 1 cut(s) 269
XceI RCATGY 1 cut(s) 175
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.