Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

35832697 .. 35836039

Gene Structure 3343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24612

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTATCATGTTATGTCTTACTGGCTGACATCTAAGCTACATCACAAGATAGGCTCCTTTATCTTGCTATTCTTTTTTACAAGCCCCTTGGCATGTGACCTTTCTGGTCTACCTGTAATCTACAATGAGGAGGAAGAATTGAAACTAGCTAATGAGCAGAGAAAGTTCAGGAACTCTAGAGTAAAACAACGGTCTAGAAAACAACGTGAGAACCGCAGACAAGATGTTGCATCTTCCAAACAGGAGCTGGAGAAAACTGCTGAGCCAAATGTTGAAAATGAAGAGCCCGGTAGTGCTTCTAGTAGTACATCCTCTAGTGTAAACCAAACTAGCCGGAAAGAAAGCCCAATCTTCTCGCTTTCCCCAGTTAAATCTTCCAACCAGAAAGTGTCCCCTAAGAATGTCAAGAACCTACCTCCATTACCCAACTCTAAAGCACGCATCGCCAATTATAAGGACGACAGTGACATGTACAGGTCGAATTTGATTAACCGGTCTCTATCCACCAGAGAATTTAGAAAACCAACTCAAAGGGAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

180

Amino Acids

20.75

Weight (kDa)

9.88

Isoelectric Point (pI)

74.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	453
AccI	GTMKAC	1 cut(s)	109
AciI	CCGC	1 cut(s)	214
AcsI	RAATTY	2 cut(s)	481, 512
AfaI	GTAC	2 cut(s)	307, 473
AflIII	ACRYGT	1 cut(s)	468
AgeI	ACCGGT	1 cut(s)	492
AgsI	TTSAA	2 cut(s)	142, 275
AluBI	AGCT	3 cut(s)	37, 149, 247
AluI	AGCT	3 cut(s)	37, 149, 247
Alw26I	GTCTC	1 cut(s)	501
AlwNI	CAGNNNCTG	1 cut(s)	247
ApoI	RAATTY	2 cut(s)	481, 512
AsiGI	ACCGGT	1 cut(s)	492
AsuC2I	CCSGG	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	501
BfaI	CTAG	6 cut(s)	146, 177, 195, 300, 315, 330
BlpI	GCTNAGC	1 cut(s)	261
Bme1390I	CCNGG	1 cut(s)	288
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	288
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	2 cut(s)	239, 450
BmuI	ACTGGG	1 cut(s)	359
BpmI	CTGGAG	1 cut(s)	269
Bpu1102I	GCTNAGC	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	501
BsaJI	CCNNGG	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	492
Bse118I	RCCGGY	1 cut(s)	492
Bse1I	ACTGG	2 cut(s)	26, 365
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	308
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	2 cut(s)	26, 365
BseRI	GAGGAG	1 cut(s)	143
BshTI	ACCGGT	1 cut(s)	492
BsiSI	CCGG	3 cut(s)	288, 334, 493
BslFI	GGGAC	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	501
BsmFI	GGGAC	1 cut(s)	376
Bso31I	GGTCTC	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp1407I	TGTACA	1 cut(s)	471
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	214
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	55
BspQI	GCTCTTC	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	501
BsrFI	RCCGGY	1 cut(s)	492
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	2 cut(s)	26, 365
BssAI	RCCGGY	1 cut(s)	492
BssECI	CCNNGG	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	192, 464
Bst6I	CTCTTC	1 cut(s)	276
BstAUI	TGTACA	1 cut(s)	471
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	3 cut(s)	33, 261, 396
BstF5I	GGATG	1 cut(s)	308
BstMAI	GTCTC	1 cut(s)	501
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNSI	RCATGY	2 cut(s)	96, 472
BstSCI	CCNGG	1 cut(s)	286
BtgZI	GCGATG	1 cut(s)	427
BtsCI	GGATG	1 cut(s)	308
BtsIMutI	CAGTG	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	439
CaiI	CAGNNNCTG	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	492
Csp6I	GTAC	2 cut(s)	306, 472
CspAI	ACCGGT	1 cut(s)	492
CviAII	CATG	3 cut(s)	8, 93, 469
CviQI	GTAC	2 cut(s)	306, 472
DdeI	CTNAG	3 cut(s)	33, 261, 396
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	288
Eco31I	GGTCTC	1 cut(s)	501
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	3 cut(s)	11, 96, 472
FaiI	YATR	6 cut(s)	9, 14, 94, 453, 470, 541
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	3 cut(s)	7, 92, 468
FblI	GTMKAC	1 cut(s)	109
FokI	GGATG	1 cut(s)	295
FriOI	GRGCYC	1 cut(s)	288
FspBI	CTAG	6 cut(s)	146, 177, 195, 300, 315, 330
GsuI	CTGGAG	1 cut(s)	269
HapII	CCGG	3 cut(s)	288, 334, 493
Hin1II	CATG	3 cut(s)	11, 96, 472
HpaII	CCGG	3 cut(s)	288, 334, 493
Hpy166II	GTNNAC	2 cut(s)	110, 322
Hpy188III	TCNNGA	4 cut(s)	169, 177, 195, 406
Hpy8I	GTNNAC	2 cut(s)	110, 322
HpyCH4III	ACNGT	2 cut(s)	192, 464
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	3 cut(s)	33, 261, 396
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	3 cut(s)	11, 96, 472
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	2 cut(s)	59, 244
LweI	GCATC	2 cut(s)	239, 450
MaeI	CTAG	6 cut(s)	146, 177, 195, 300, 315, 330
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	2 cut(s)	95, 464
MboII	GAAGA	5 cut(s)	146, 225, 293, 343, 366
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	4 cut(s)	137, 448, 481, 512
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	4 cut(s)	121, 124, 322, 426
MseI	TTAA	2 cut(s)	369, 489
MspI	CCGG	3 cut(s)	288, 334, 493
MspR9I	CCNGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	443
NciI	CCSGG	1 cut(s)	288
NlaIII	CATG	3 cut(s)	11, 96, 472
NlaIV	GGNNCC	1 cut(s)	55
NmuCI	GTSAC	2 cut(s)	95, 464
NspI	RCATGY	2 cut(s)	96, 472
PciI	ACATGT	1 cut(s)	468
PciSI	GCTCTTC	1 cut(s)	276
PinAI	ACCGGT	1 cut(s)	492
PscI	ACATGT	1 cut(s)	468
PsiI	TTATAA	1 cut(s)	453
PspN4I	GGNNCC	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	247
RsaI	GTAC	2 cut(s)	307, 473
RsaNI	GTAC	2 cut(s)	306, 472
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	369, 489
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	9 cut(s)	39, 102, 115, 151, 208, 249, 414, 418, 479
SfaNI	GCATC	2 cut(s)	239, 450
Sse9I	AATT	4 cut(s)	137, 448, 481, 512
SsiI	CCGC	1 cut(s)	214
SspMI	CTAG	6 cut(s)	146, 177, 195, 300, 315, 330
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	192, 464
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	479
TasI	AATT	4 cut(s)	137, 448, 481, 512
TatI	WGTACW	2 cut(s)	305, 471
Tru1I	TTAA	2 cut(s)	369, 489
Tru9I	TTAA	2 cut(s)	369, 489
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	2 cut(s)	95, 464
Tsp45I	GTSAC	2 cut(s)	95, 464
TspDTI	ATGAA	1 cut(s)	294
TspRI	CASTG	1 cut(s)	469
XapI	RAATTY	2 cut(s)	481, 512
XbaI	TCTAGA	2 cut(s)	176, 194
XceI	RCATGY	2 cut(s)	96, 472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	109
XspI	CTAG	6 cut(s)	146, 177, 195, 300, 315, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.