RchiOBHm_Chr6g0287161

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
50559923 .. 50561244
1322 bp
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UTR
Exon/CDS
Intron
PRQ25760

Sequence Viewer

Length: 513 bp
ATGGGGAAGCTAACGCGGGTTGAGTATTTTAGTCTTTACAGCAACAATCTCAGCAGTGCCATTCCATATCAGCTGGACAATCTGGAAAAGGTACAATATTTGGTTCTTGGAACGAATGATAACAGCTTTACAGGGTCATTGCCCGAGTGCTTGAGATTTTGTTCAGCATTAGTTCTAGTGTGGCTTGATCAGAACAAATTCACTGGTAACATTGCCAATGCATTTGGTACACATCCCAGCCTTAAGTACGTTTCTCTCAGTAGCAATCAATTTCTCAGTCATGTCTCACCAGAATGGGGAGAATACAAAAATCTCACTTGCTTACTGATTGATAGAAATAAAACATCCGGTGAAATACCGGTTGAGCTTGGGAAGTTGATCAACTTGGAGAAGCTCAGTCTTGACTCTAATGACTTGACTGGACACGTTCCACCTCAATTGGGAAACTTAGGCATGTTGTTCAGTCTCCACCTGAGCAATAATCATCTGATGGGGGGGTCCCTCAGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

170

Amino Acids

18.88

Weight (kDa)

6.18

Isoelectric Point (pI)

28.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 16
AciI CCGC 1 cut(s) 16
AcsI RAATTY 1 cut(s) 197
AfaI GTAC 3 cut(s) 93, 229, 248
AfiI CCNNNNNNNGG 2 cut(s) 296, 440
AflII CTTAAG 1 cut(s) 242
AflIII ACRYGT 1 cut(s) 424
AgeI ACCGGT 1 cut(s) 358
AluBI AGCT 5 cut(s) 10, 73, 126, 367, 394
AluI AGCT 5 cut(s) 10, 73, 126, 367, 394
Alw26I GTCTC 2 cut(s) 289, 470
Ama87I CYCGRG 1 cut(s) 143
ApoI RAATTY 1 cut(s) 197
AsiGI ACCGGT 1 cut(s) 358
Asp700I GAANNNNTTC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 498
AsuHPI GGTGA 2 cut(s) 279, 362
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 1 cut(s) 498
BccI CCATC 1 cut(s) 484
BclI TGATCA 2 cut(s) 187, 378
BcoDI GTCTC 2 cut(s) 289, 470
BfaI CTAG 1 cut(s) 176
BfrI CTTAAG 1 cut(s) 242
Bme18I GGWCC 1 cut(s) 498
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 498
BmiI GGNNCC 2 cut(s) 499, 500
Bpu10I CCTNAGC 1 cut(s) 473
BpuEI CTTGAG 1 cut(s) 172
BsaWI WCCGGW 2 cut(s) 347, 358
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 440
Bse118I RCCGGY 1 cut(s) 358
Bse1I ACTGG 2 cut(s) 208, 424
Bse3DI GCAATG 2 cut(s) 137, 210
BseGI GGATG 2 cut(s) 232, 344
BseLI CCNNNNNNNGG 2 cut(s) 296, 440
BseMI GCAATG 2 cut(s) 137, 210
BseMII CTCAG 5 cut(s) 64, 271, 289, 409, 464
BseNI ACTGG 2 cut(s) 208, 424
BseYI CCCAGC 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 16
BshTI ACCGGT 1 cut(s) 358
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 2 cut(s) 348, 359
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 2 cut(s) 296, 440
BsmAI GTCTC 2 cut(s) 289, 470
BsmFI GGGAC 1 cut(s) 484
BsoBI CYCGRG 1 cut(s) 143
Bsp143I GATC 2 cut(s) 187, 378
BspACI CCGC 1 cut(s) 16
BspCNI CTCAG 5 cut(s) 63, 270, 288, 408, 465
BspFNI CGCG 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 499, 500
BspTI CTTAAG 1 cut(s) 242
BsrDI GCAATG 2 cut(s) 137, 210
BsrFI RCCGGY 1 cut(s) 358
BsrI ACTGG 2 cut(s) 208, 424
BssAI RCCGGY 1 cut(s) 358
BssMI GATC 2 cut(s) 187, 378
BstAFI CTTAAG 1 cut(s) 242
BstDEI CTNAG 7 cut(s) 50, 257, 275, 395, 448, 473, 503
BstF5I GGATG 2 cut(s) 232, 344
BstFNI CGCG 1 cut(s) 16
BstKTI GATC 2 cut(s) 190, 381
BstMAI GTCTC 2 cut(s) 289, 470
BstMBI GATC 2 cut(s) 187, 378
BstNSI RCATGY 1 cut(s) 457
BstUI CGCG 1 cut(s) 16
BtsCI GGATG 2 cut(s) 232, 344
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 2 cut(s) 61, 201
Cfr10I RCCGGY 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 498
Csp6I GTAC 3 cut(s) 92, 228, 247
CspAI ACCGGT 1 cut(s) 358
CspCI CAANNNNNGTGG 2 cut(s) 420, 455
CviAII CATG 2 cut(s) 281, 454
CviJI RGCY 7 cut(s) 10, 73, 126, 184, 240, 367, 394
CviKI_1 RGCY 7 cut(s) 10, 73, 126, 184, 240, 367, 394
CviQI GTAC 3 cut(s) 92, 228, 247
DdeI CTNAG 7 cut(s) 50, 257, 275, 395, 448, 473, 503
DpnI GATC 2 cut(s) 189, 380
DpnII GATC 2 cut(s) 187, 378
Eco47I GGWCC 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 498
EcoT22I ATGCAT 1 cut(s) 223
FaeI CATG 2 cut(s) 284, 457
FaiI YATR 3 cut(s) 67, 282, 455
FaqI GGGAC 1 cut(s) 484
FatI CATG 2 cut(s) 280, 453
FauI CCCGC 1 cut(s) 9
FbaI TGATCA 2 cut(s) 187, 378
FokI GGATG 2 cut(s) 219, 331
FspBI CTAG 1 cut(s) 176
GsaI CCCAGC 1 cut(s) 240
HapII CCGG 2 cut(s) 348, 359
Hin1II CATG 2 cut(s) 284, 457
HinfI GANTC 2 cut(s) 404, 507
HpaII CCGG 2 cut(s) 348, 359
HphI GGTGA 2 cut(s) 279, 362
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 3 cut(s) 192, 489, 506
Hpy188III TCNNGA 2 cut(s) 83, 401
Hpy8I GTNNAC 1 cut(s) 230
HpyCH4IV ACGT 2 cut(s) 249, 426
HpyCH4V TGCA 1 cut(s) 221
HpyF3I CTNAG 7 cut(s) 50, 257, 275, 395, 448, 473, 503
HpySE526I ACGT 2 cut(s) 249, 426
Hsp92II CATG 2 cut(s) 284, 457
KflI GGGWCCC 1 cut(s) 498
Ksp22I TGATCA 2 cut(s) 187, 378
Kzo9I GATC 2 cut(s) 187, 378
MaeI CTAG 1 cut(s) 176
MaeII ACGT 2 cut(s) 249, 426
MaeIII GTNAC 1 cut(s) 206
MalI GATC 2 cut(s) 189, 380
MboI GATC 2 cut(s) 187, 378
MfeI CAATTG 1 cut(s) 437
MluCI AATT 3 cut(s) 197, 269, 437
MlyI GAGTC 1 cut(s) 398
MnlI CCTC 2 cut(s) 444, 512
Mph1103I ATGCAT 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 292
MspA1I CMGCKG 1 cut(s) 73
MspCI CTTAAG 1 cut(s) 242
MspI CCGG 2 cut(s) 348, 359
MunI CAATTG 1 cut(s) 437
MvnI CGCG 1 cut(s) 16
NdeII GATC 2 cut(s) 187, 378
NlaIII CATG 2 cut(s) 284, 457
NlaIV GGNNCC 2 cut(s) 499, 500
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 1 cut(s) 507
PinAI ACCGGT 1 cut(s) 358
PleI GAGTC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 398
PpuMI RGGWCCY 1 cut(s) 498
Psp5II RGGWCCY 1 cut(s) 498
PspFI CCCAGC 1 cut(s) 236
PspN4I GGNNCC 2 cut(s) 499, 500
PspPI GGNCC 1 cut(s) 498
PspPPI RGGWCCY 1 cut(s) 498
PvuII CAGCTG 1 cut(s) 73
RsaI GTAC 3 cut(s) 93, 229, 248
RsaNI GTAC 3 cut(s) 92, 228, 247
RseI CAYNNNNRTG 1 cut(s) 292
SaqAI TTAA 1 cut(s) 243
Sau3AI GATC 2 cut(s) 187, 378
Sau96I GGNCC 1 cut(s) 498
SchI GAGTC 1 cut(s) 398
SinI GGWCC 1 cut(s) 498
SmiMI CAYNNNNRTG 1 cut(s) 292
SmlI CTYRAG 2 cut(s) 151, 242
SmoI CTYRAG 2 cut(s) 151, 242
Sse9I AATT 3 cut(s) 197, 269, 437
SsiI CCGC 1 cut(s) 16
SspI AATATT 1 cut(s) 98
SspMI CTAG 1 cut(s) 176
TaiI ACGT 2 cut(s) 252, 429
TasI AATT 3 cut(s) 197, 269, 437
TfiI GAWTC 1 cut(s) 507
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 2 cut(s) 61, 208
TspRI CASTG 2 cut(s) 61, 208
Vha464I CTTAAG 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 498
XapI RAATTY 1 cut(s) 197
XceI RCATGY 1 cut(s) 457
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 1 cut(s) 176
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.