RchiOBHm_Chr6g0290291
HSP70 Family

Heat shock 70 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
53378543 .. 53380237
1695 bp
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UTR
Exon/CDS
Intron
PRQ26043

Sequence Viewer

Length: 222 bp
ATGGCTGAGGCAGCATACACAGTGGCATCTGATAGTGAAACCAGTCTGGAGGAGAAATCTTCATGCACCTTTCCTGAAACAACAGTTGGAATTGATATTGGTACCTCACAATGCAGGGTTGCAATCTGGAATGGCTCCCAGGTTGAGATCCTTAAAAACAGTAGGAACCAGAAGATGATGAGTTCATATGTTACGTTCAAGGATGGAACTCCTTCAAACTGA

Protein Analysis

73

Amino Acids

7.93

Weight (kDa)

4.65

Isoelectric Point (pI)

57.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 29 - 68 7.3e-08 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 101
AccB1I GGYRCC 1 cut(s) 101
AclWI GGATC 1 cut(s) 142
AfaI GTAC 1 cut(s) 103
AgsI TTSAA 2 cut(s) 199, 216
AjnI CCWGG 1 cut(s) 138
AjuI GAANNNNNNNTTGG 2 cut(s) 69, 101
AlwI GGATC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 11
Asp700I GAANNNNTTC 1 cut(s) 211
Asp718I GGTACC 1 cut(s) 101
BanI GGYRCC 1 cut(s) 101
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 1 cut(s) 23
BccI CCATC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 140
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 140
BmiI GGNNCC 3 cut(s) 103, 136, 167
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 68
Bpu10I CCTNAGC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 23
BshNI GGYRCC 1 cut(s) 101
Bsp143I GATC 1 cut(s) 147
BspLI GGNNCC 3 cut(s) 103, 136, 167
BspPI GGATC 1 cut(s) 142
BspT107I GGYRCC 1 cut(s) 101
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 3 cut(s) 22, 85, 161
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BtsCI GGATG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 27
Csp6I GTAC 1 cut(s) 102
CviAII CATG 1 cut(s) 63
CviJI RGCY 2 cut(s) 5, 135
CviKI_1 RGCY 2 cut(s) 5, 135
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 138
FaeI CATG 1 cut(s) 66
FaiI YATR 4 cut(s) 16, 64, 187, 189
FatI CATG 1 cut(s) 62
FauNDI CATATG 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 12
GsuI CTGGAG 1 cut(s) 68
Hin1II CATG 1 cut(s) 66
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 3 cut(s) 47, 74, 127
HpyAV CCTTC 1 cut(s) 222
HpyCH4III ACNGT 3 cut(s) 22, 85, 161
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 3 cut(s) 66, 114, 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 1 cut(s) 194
Hsp92II CATG 1 cut(s) 66
KpnI GGTACC 1 cut(s) 105
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 8 cut(s) 32, 55, 87, 100, 112, 125, 152, 182
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 1 cut(s) 35
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 2 cut(s) 51, 184
MflI RGATCY 1 cut(s) 147
MluCI AATT 1 cut(s) 90
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 2 cut(s) 43, 115
MroXI GAANNNNTTC 1 cut(s) 211
MseI TTAA 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeI CATATG 1 cut(s) 187
NdeII GATC 1 cut(s) 147
NlaIII CATG 1 cut(s) 66
NlaIV GGNNCC 3 cut(s) 103, 136, 167
PdmI GAANNNNTTC 1 cut(s) 211
PkrI GCNGC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 3 cut(s) 103, 136, 167
PsuI RGATCY 1 cut(s) 147
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 140
SetI ASST 4 cut(s) 71, 107, 144, 197
SfaNI GCATC 1 cut(s) 35
Sse9I AATT 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 138
TaaI ACNGT 3 cut(s) 22, 85, 161
TaiI ACGT 1 cut(s) 197
TasI AATT 1 cut(s) 90
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 27
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 2 cut(s) 51, 174
TspRI CASTG 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.