RchiOBHm_Chr6g0296001

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
57801779 .. 57802764
986 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26567

Sequence Viewer

Length: 915 bp
ATGCTACCACATTTGGTGTTTGATGATAAGTGTATCCCGACTGAGCACTATAAATTTGTGAGTATAGTTGATCATGTACTCTTGGAGACGTATGTACTCTTGGAGACTACGTACGAACTCTACTTGATGCCTTCATGTATGTTTGCATGTCAAGACTTGATACGTTTAAAGGTATATAAATGTTTGCTACAACCTCCGTCCACATTCAAAGGCTTCAAAAGTTTGAGAATCCATTGTATTGAAAATGTTAGCCTGGATCAAGAGATGCTCGAAAATTTCACTTCTTGTTCTCTGCTTGAGGGGTTGACTTTGAAAGACTGTCATGGTTTCCAACAACTCAAGATTGATGCACCAAATCTCCGATTTCTTCTCTTTACGGGTGATTGGTTTTGCAGATCTACCAATTCGCTAAAGTCTTTTGCAGACCTTCCCCATATTCAGAGGCTTAGCATCAGCAACTCCTTTACAAAGTATTTGGCTGCTGGTTCCCTGCTGCAAAAGCTGCCTCTTCCATGTTTACATTTAAATTTTTTTACCTTGAGCATATGCTATAATGATCTGGAAGATTTTTTAACTGCTCTTTGTCTTTTGAAAAGCTCCCCTGCTCTGAAAGAATTAAATATTTTTGCTTTTGGCCGCCGACATTATCAGGCTAATGCGGGAAAAGTGAACTATTGGGTTGATGAGAACCAGAGTTGCTCATTCACGCATCTGAGACATGTGAAAATATACAACTTCCTTACTGTCGAACTTGCAATAGATTTTGTCAATTTTTTGCTTTTAAGTTCACCTGCGCTTGAGACGATGAGTTTATATCAAGACAAGTCTGTTCCTTCTCATGATGGTTTTGATTTAGCAAAAACGTTACTCCGGTTTCCGCGTGCGTCACTGAAGCTAGAGATAATTCTACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

304

Amino Acids

34.97

Weight (kDa)

6.59

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 41 - 154 6.4e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 799
Acc36I ACCTGC 1 cut(s) 799
AccII CGCG 1 cut(s) 880
AciI CCGC 3 cut(s) 637, 659, 878
AclI AACGTT 1 cut(s) 863
AclWI GGATC 1 cut(s) 264
AcoI YGGCCR 1 cut(s) 634
AcsI RAATTY 3 cut(s) 53, 274, 526
AcuI CTGAAG 1 cut(s) 911
AfaI GTAC 3 cut(s) 78, 96, 113
AflIII ACRYGT 1 cut(s) 718
AgsI TTSAA 5 cut(s) 208, 217, 242, 313, 592
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 3 cut(s) 502, 597, 895
AluI AGCT 3 cut(s) 502, 597, 895
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 4 cut(s) 80, 98, 709, 794
AlwI GGATC 1 cut(s) 264
AoxI GGCC 1 cut(s) 634
ApeKI GCWGC 3 cut(s) 479, 493, 502
ApoI RAATTY 3 cut(s) 53, 274, 526
AspLEI GCGC 1 cut(s) 796
AsuHPI GGTGA 2 cut(s) 392, 780
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 3 cut(s) 466, 480, 489
BccI CCATC 1 cut(s) 836
BciT130I CCWGG 1 cut(s) 254
BciVI GTATCC 1 cut(s) 44
BclI TGATCA 1 cut(s) 70
BcoDI GTCTC 4 cut(s) 80, 98, 709, 794
BfaI CTAG 1 cut(s) 896
BfuAI ACCTGC 1 cut(s) 799
BfuI GTATCC 1 cut(s) 44
BglII AGATCT 1 cut(s) 395
BisI GCNGC 4 cut(s) 480, 494, 503, 637
BlpI GCTNAGC 1 cut(s) 446
BlsI GCNGC 4 cut(s) 481, 495, 504, 638
Bme1390I CCNGG 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 487
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 5 cut(s) 117, 255, 337, 459, 718
Bpu1102I GCTNAGC 1 cut(s) 446
BpuEI CTTGAG 4 cut(s) 317, 323, 559, 818
BsaAI YACGTR 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 870
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 342, 372
BseBI CCWGG 1 cut(s) 254
BseMII CTCAG 2 cut(s) 33, 704
BseXI GCAGC 3 cut(s) 466, 480, 489
Bsh1236I CGCG 1 cut(s) 880
BshFI GGCC 1 cut(s) 636
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 1 cut(s) 871
BsiWI CGTACG 1 cut(s) 111
BsmAI GTCTC 4 cut(s) 80, 98, 709, 794
BsmBI CGTCTC 2 cut(s) 80, 794
BsnI GGCC 1 cut(s) 636
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 4 cut(s) 70, 256, 395, 556
Bsp1720I GCTNAGC 1 cut(s) 446
BspACI CCGC 3 cut(s) 637, 659, 878
BspANI GGCC 1 cut(s) 636
BspCNI CTCAG 2 cut(s) 34, 705
BspFNI CGCG 1 cut(s) 880
BspHI TCATGA 1 cut(s) 838
BspLI GGNNCC 1 cut(s) 487
BspMI ACCTGC 1 cut(s) 799
BspPI GGATC 1 cut(s) 264
BssMI GATC 4 cut(s) 70, 256, 395, 556
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 2 cut(s) 320, 745
Bst6I CTCTTC 1 cut(s) 513
BstAPI GCANNNNNTGC 1 cut(s) 502
BstBAI YACGTR 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 882
BstDEI CTNAG 3 cut(s) 42, 446, 713
BstFNI CGCG 1 cut(s) 880
BstHHI GCGC 1 cut(s) 796
BstKTI GATC 4 cut(s) 73, 259, 398, 559
BstMAI GTCTC 4 cut(s) 80, 98, 709, 794
BstMBI GATC 4 cut(s) 70, 256, 395, 556
BstMWI GCNNNNNNNGC 2 cut(s) 499, 502
BstNI CCWGG 1 cut(s) 254
BstNSI RCATGY 2 cut(s) 150, 722
BstSCI CCNGG 1 cut(s) 252
BstSNI TACGTA 1 cut(s) 111
BstUI CGCG 1 cut(s) 880
BstV1I GCAGC 3 cut(s) 466, 480, 489
BstX2I RGATCY 1 cut(s) 395
BstYI RGATCY 1 cut(s) 395
BsuI GTATCC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 636
BtsIMutI CAGTG 1 cut(s) 887
BveI ACCTGC 1 cut(s) 799
Cac8I GCNNGC 1 cut(s) 882
CciI TCATGA 1 cut(s) 838
CfoI GCGC 1 cut(s) 796
CseI GACGC 1 cut(s) 873
Csp6I GTAC 3 cut(s) 77, 95, 112
CviAII CATG 7 cut(s) 74, 135, 147, 323, 513, 719, 839
CviJI RGCY 9 cut(s) 213, 252, 445, 479, 502, 597, 636, 653, 895
CviKI_1 RGCY 9 cut(s) 213, 252, 445, 479, 502, 597, 636, 653, 895
CviQI GTAC 3 cut(s) 77, 95, 112
DdeI CTNAG 3 cut(s) 42, 446, 713
DpnI GATC 4 cut(s) 72, 258, 397, 558
DpnII GATC 4 cut(s) 70, 256, 395, 556
DraI TTTAAA 2 cut(s) 168, 525
EaeI YGGCCR 1 cut(s) 634
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Eco105I TACGTA 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 911
EcoRII CCWGG 1 cut(s) 252
Esp3I CGTCTC 2 cut(s) 80, 794
FaeI CATG 7 cut(s) 77, 138, 150, 326, 516, 722, 842
FatI CATG 7 cut(s) 73, 134, 146, 322, 512, 718, 838
FauI CCCGC 1 cut(s) 652
FauNDI CATATG 1 cut(s) 545
FbaI TGATCA 1 cut(s) 70
Fnu4HI GCNGC 4 cut(s) 480, 494, 503, 637
Fsp4HI GCNGC 4 cut(s) 480, 494, 503, 637
FspBI CTAG 1 cut(s) 896
GlaI GCGC 1 cut(s) 795
GluI GCNGC 4 cut(s) 480, 494, 503, 637
HaeIII GGCC 1 cut(s) 636
HapII CCGG 1 cut(s) 871
HgaI GACGC 1 cut(s) 873
HhaI GCGC 1 cut(s) 796
Hin1II CATG 7 cut(s) 77, 138, 150, 326, 516, 722, 842
Hin6I GCGC 1 cut(s) 794
HinP1I GCGC 1 cut(s) 794
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 1 cut(s) 228
HpaII CCGG 1 cut(s) 871
HphI GGTGA 2 cut(s) 392, 780
Hpy166II GTNNAC 5 cut(s) 201, 306, 518, 670, 788
Hpy188I TCNGA 5 cut(s) 362, 441, 609, 714, 914
Hpy188III TCNNGA 7 cut(s) 37, 152, 260, 340, 560, 818, 839
Hpy8I GTNNAC 5 cut(s) 201, 306, 518, 670, 788
HpyAV CCTTC 3 cut(s) 141, 437, 843
HpyCH4III ACNGT 2 cut(s) 320, 745
HpyCH4IV ACGT 4 cut(s) 89, 110, 163, 863
HpyCH4V TGCA 6 cut(s) 146, 350, 393, 422, 496, 755
HpyF10VI GCNNNNNNNGC 2 cut(s) 499, 502
HpyF3I CTNAG 3 cut(s) 42, 446, 713
HpySE526I ACGT 4 cut(s) 89, 110, 163, 863
Hsp92II CATG 7 cut(s) 77, 138, 150, 326, 516, 722, 842
HspAI GCGC 1 cut(s) 794
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 4 cut(s) 70, 256, 395, 556
LmnI GCTCC 1 cut(s) 602
Lsp1109I GCAGC 3 cut(s) 466, 480, 489
LweI GCATC 5 cut(s) 117, 255, 337, 459, 718
MaeI CTAG 1 cut(s) 896
MaeII ACGT 4 cut(s) 89, 110, 163, 863
MaeIII GTNAC 2 cut(s) 864, 885
MalI GATC 4 cut(s) 72, 258, 397, 558
MboI GATC 4 cut(s) 70, 256, 395, 556
MboII GAAGA 3 cut(s) 359, 500, 575
MflI RGATCY 1 cut(s) 395
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 7 cut(s) 53, 274, 403, 526, 614, 769, 903
MmeI TCCRAC 1 cut(s) 355
MnlI CCTC 4 cut(s) 204, 292, 435, 516
MseI TTAA 5 cut(s) 167, 524, 572, 617, 782
MspI CCGG 1 cut(s) 871
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
MvnI CGCG 1 cut(s) 880
MwoI GCNNNNNNNGC 2 cut(s) 499, 502
NdeI CATATG 1 cut(s) 545
NdeII GATC 4 cut(s) 70, 256, 395, 556
NlaIII CATG 7 cut(s) 77, 138, 150, 326, 516, 722, 842
NlaIV GGNNCC 1 cut(s) 487
NmuCI GTSAC 1 cut(s) 885
NspI RCATGY 2 cut(s) 150, 722
PagI TCATGA 1 cut(s) 838
PaqCI CACCTGC 1 cut(s) 799
PciI ACATGT 1 cut(s) 718
PfeI GAWTC 1 cut(s) 228
Pfl23II CGTACG 1 cut(s) 111
PkrI GCNGC 4 cut(s) 481, 495, 504, 638
Ppu21I YACGTR 1 cut(s) 111
PscI ACATGT 1 cut(s) 718
Psp1406I AACGTT 1 cut(s) 863
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspLI CGTACG 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 487
PsuI RGATCY 1 cut(s) 395
RsaI GTAC 3 cut(s) 78, 96, 113
RsaNI GTAC 3 cut(s) 77, 95, 112
SaqAI TTAA 5 cut(s) 167, 524, 572, 617, 782
SatI GCNGC 4 cut(s) 480, 494, 503, 637
Sau3AI GATC 4 cut(s) 70, 256, 395, 556
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 1 cut(s) 48
SfaNI GCATC 5 cut(s) 117, 255, 337, 459, 718
SmiI ATTTAAAT 1 cut(s) 525
SmlI CTYRAG 4 cut(s) 296, 338, 538, 797
SmoI CTYRAG 4 cut(s) 296, 338, 538, 797
SnaBI TACGTA 1 cut(s) 111
Sse9I AATT 7 cut(s) 53, 274, 403, 526, 614, 769, 903
SsiI CCGC 3 cut(s) 637, 659, 878
SspI AATATT 1 cut(s) 622
SspMI CTAG 1 cut(s) 896
StyD4I CCNGG 1 cut(s) 252
SwaI ATTTAAAT 1 cut(s) 525
TaaI ACNGT 2 cut(s) 320, 745
TaiI ACGT 4 cut(s) 92, 113, 166, 866
TaqI TCGA 2 cut(s) 270, 747
TasI AATT 7 cut(s) 53, 274, 403, 526, 614, 769, 903
TatI WGTACW 2 cut(s) 76, 94
TauI GCSGC 1 cut(s) 639
TfiI GAWTC 1 cut(s) 228
Tru1I TTAA 5 cut(s) 167, 524, 572, 617, 782
Tru9I TTAA 5 cut(s) 167, 524, 572, 617, 782
TscAI CASTG 1 cut(s) 894
TseFI GTSAC 1 cut(s) 885
TseI GCWGC 3 cut(s) 479, 493, 502
Tsp45I GTSAC 1 cut(s) 885
TspDTI ATGAA 1 cut(s) 123
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 1 cut(s) 894
XapI RAATTY 3 cut(s) 53, 274, 526
XceI RCATGY 2 cut(s) 150, 722
XspI CTAG 1 cut(s) 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.