RchiOBHm_Chr6g0296011

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
57803679 .. 57808057
4379 bp
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UTR
Exon/CDS
Intron
PRQ26568

Sequence Viewer

Length: 351 bp
ATGGAGATGGAGTTGGATAGAATAAGCAACTTACCAAGTGATAAATGTGATGTTATAGATAAAATACTATCACATTTGCCACTCAGGGACGTAGCGAGGACATGTGTTTTGTCAAGCAAGTGGAGATTTAAGCTTAGTCAAGGATGTAAACACCTCAGAGATATTGATCGGTGGATTCTTCACCTGTCGAGATACTCCCTCAAACAGTTCGTGGTTGATCTTTGGGAAGGGCAGCCTATGCCGCGCTACAAGATGCCTTCATGCATGTTTTCATGTCAAGATATCATTCATTTAAAGTTGCGTAATTTTCCGCTAAAACCCCGTCTACATTCAAAGGGTTCAGGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

116

Amino Acids

13.68

Weight (kDa)

9.54

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 325
AccII CGCG 1 cut(s) 244
AciI CCGC 2 cut(s) 242, 311
AflIII ACRYGT 1 cut(s) 101
AgsI TTSAA 1 cut(s) 333
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 232
ArsI GACNNNNNNTTYG 2 cut(s) 91, 123
AspLEI GCGC 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 173
BbvI GCAGC 1 cut(s) 244
BisI GCNGC 2 cut(s) 233, 242
BlsI GCNGC 2 cut(s) 234, 243
BmsI GCATC 1 cut(s) 243
BsaBI GATNNNNATC 1 cut(s) 165
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 165
BseGI GGATG 1 cut(s) 149
BseJI GATNNNNATC 1 cut(s) 165
BseMII CTCAG 2 cut(s) 97, 169
BseXI GCAGC 1 cut(s) 244
Bsh1236I CGCG 1 cut(s) 244
BslFI GGGAC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 101
Bsp143I GATC 2 cut(s) 166, 217
BspACI CCGC 2 cut(s) 242, 311
BspCNI CTCAG 2 cut(s) 96, 168
BspFNI CGCG 1 cut(s) 244
BssMI GATC 2 cut(s) 166, 217
Bst4CI ACNGT 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 238
BstDEI CTNAG 3 cut(s) 83, 134, 155
BstF5I GGATG 1 cut(s) 149
BstFNI CGCG 1 cut(s) 244
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 2 cut(s) 169, 220
BstMBI GATC 2 cut(s) 166, 217
BstMWI GCNNNNNNNGC 2 cut(s) 238, 241
BstNSI RCATGY 2 cut(s) 105, 268
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 244
BtsCI GGATG 1 cut(s) 149
CfoI GCGC 1 cut(s) 246
CviAII CATG 4 cut(s) 102, 261, 265, 273
CviJI RGCY 2 cut(s) 133, 235
CviKI_1 RGCY 2 cut(s) 133, 235
DdeI CTNAG 3 cut(s) 83, 134, 155
DpnI GATC 2 cut(s) 168, 219
DpnII GATC 2 cut(s) 166, 217
DraI TTTAAA 1 cut(s) 294
Eco32I GATATC 1 cut(s) 283
EcoRV GATATC 1 cut(s) 283
EcoT22I ATGCAT 1 cut(s) 266
FaeI CATG 4 cut(s) 105, 264, 268, 276
FaiI YATR 6 cut(s) 56, 103, 239, 262, 266, 274
FaqI GGGAC 1 cut(s) 101
FatI CATG 4 cut(s) 101, 260, 264, 272
FblI GTMKAC 1 cut(s) 325
Fnu4HI GCNGC 2 cut(s) 233, 242
FokI GGATG 1 cut(s) 156
Fsp4HI GCNGC 2 cut(s) 233, 242
GlaI GCGC 1 cut(s) 245
GluI GCNGC 2 cut(s) 233, 242
HhaI GCGC 1 cut(s) 246
Hin1II CATG 4 cut(s) 105, 264, 268, 276
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 1 cut(s) 175
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 2 cut(s) 149, 326
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 3 cut(s) 189, 278, 342
Hpy8I GTNNAC 2 cut(s) 149, 326
HpyAV CCTTC 2 cut(s) 221, 267
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 264
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 241
HpyF3I CTNAG 3 cut(s) 83, 134, 155
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 4 cut(s) 105, 264, 268, 276
HspAI GCGC 1 cut(s) 244
Kzo9I GATC 2 cut(s) 166, 217
LpnPI CCDG 3 cut(s) 70, 197, 327
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 243
MaeII ACGT 1 cut(s) 90
MalI GATC 2 cut(s) 168, 219
MboI GATC 2 cut(s) 166, 217
MboII GAAGA 1 cut(s) 170
MluCI AATT 1 cut(s) 304
MnlI CCTC 3 cut(s) 90, 164, 209
Mph1103I ATGCAT 1 cut(s) 266
MseI TTAA 2 cut(s) 129, 293
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 238, 241
NdeII GATC 2 cut(s) 166, 217
NlaIII CATG 4 cut(s) 105, 264, 268, 276
NsiI ATGCAT 1 cut(s) 266
NspI RCATGY 2 cut(s) 105, 268
PciI ACATGT 1 cut(s) 101
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 2 cut(s) 234, 243
PscI ACATGT 1 cut(s) 101
SaqAI TTAA 2 cut(s) 129, 293
SatI GCNGC 2 cut(s) 233, 242
Sau3AI GATC 2 cut(s) 166, 217
SetI ASST 4 cut(s) 93, 135, 156, 186
SfaNI GCATC 1 cut(s) 243
Sse9I AATT 1 cut(s) 304
SsiI CCGC 2 cut(s) 242, 311
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 188
TasI AATT 1 cut(s) 304
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 2 cut(s) 129, 293
Tru9I TTAA 2 cut(s) 129, 293
TseI GCWGC 1 cut(s) 232
TspDTI ATGAA 3 cut(s) 249, 261, 278
XceI RCATGY 2 cut(s) 105, 268
XmiI GTMKAC 1 cut(s) 325
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.