RchiOBHm_Chr6g0306231

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
65006623 .. 65008240
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27525

Sequence Viewer

Length: 819 bp
ATGCAAATTAGTGTACAAGTTTCCTGGGGAGATGAATACTCCATTTGCAATCAGCAACTTGGCCTGCATTACTTTGGAAGAGTCAAATTTGTATTACCCCTTTTCGCCAACGGACAGTCACAATTTTTTTTTATAAAAAGTGAATACACACTCTTACCGACACTATACCCGTCGGTAAAGTTTGTTTTACAAAAATTGAGGGGCATAAAAGAGACGCTTCCTTGTTTCACTTCCAATTTTCTACGGTTGTTAAGCCAGCTAGCTCTTCAGAAGCTTAAGCCGTTCAGGGTTTTCCATTCCCGGAAAATCGACCCATTTTCATTCTCGTTGAATTGTGGCGTTCTCACAGATCAAGGTACCATCTCATGTCTATATTTTTTTCATGTCAGCGTTGGTCTTAGCAAAACAGAGGAGAAAAATATGAACGTGCTAGGTGATGACGAACTGGGCCTAATCCTGAACCGGATTACCGACCCGGATGATAGAAAATCGGCCTCTCTAGTCTCCAAGCGATGGTTGTTAATGGAGGGTCTGACCCGATCATCACCCAAACTTCTCCCACGATTTCTCTCAAGATTTCCAAACTTGGACACATTCAAAACGACCAAGTGTATCAGCAACGCCAACCTAGTATTGTTGGCACAAACATGTCCCAAACTTGAGGTGATCGACCTTACTACTGTGTCGATCCGTAGACAAGTTGGGGACGAAGGCCTGTGCGCATTGGCAAGTGGGTGTCCCGAATACTGCTTCGCGGGAGACATAATGTTGGGGAGGTTGTACTTGTGTCCCTCATTACTTCAGCAGCACTTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

272

Amino Acids

30.78

Weight (kDa)

8.99

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 146 - 181 4.4e-07 F-box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 134
Acc16I TGCGCA 1 cut(s) 721
Acc65I GGTACC 1 cut(s) 356
AccB1I GGYRCC 1 cut(s) 356
AccB7I CCANNNNNTGG 1 cut(s) 513
AccI GTMKAC 1 cut(s) 694
AccII CGCG 1 cut(s) 755
AciI CCGC 1 cut(s) 755
AclWI GGATC 1 cut(s) 682
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 2 cut(s) 251, 785
AfaI GTAC 3 cut(s) 15, 358, 782
AfiI CCNNNNNNNGG 1 cut(s) 513
AflII CTTAAG 1 cut(s) 275
AflIII ACRYGT 1 cut(s) 647
AgsI TTSAA 2 cut(s) 331, 598
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 3 cut(s) 259, 263, 274
AluI AGCT 3 cut(s) 259, 263, 274
Alw26I GTCTC 3 cut(s) 206, 508, 753
AlwI GGATC 1 cut(s) 682
AoxI GGCC 4 cut(s) 61, 448, 492, 712
ApeKI GCWGC 1 cut(s) 805
ApoI RAATTY 1 cut(s) 86
Asp718I GGTACC 1 cut(s) 356
AspLEI GCGC 1 cut(s) 722
AspS9I GGNCC 1 cut(s) 448
AsuC2I CCSGG 2 cut(s) 301, 476
AsuHPI GGTGA 3 cut(s) 446, 537, 676
AsuNHI GCTAGC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 356
BccI CCATC 2 cut(s) 368, 507
BceAI ACGGC 1 cut(s) 265
BciT130I CCWGG 1 cut(s) 25
BcnI CCSGG 2 cut(s) 301, 476
BcoDI GTCTC 3 cut(s) 206, 508, 753
BfaI CTAG 4 cut(s) 260, 431, 500, 629
BfrI CTTAAG 1 cut(s) 275
BisI GCNGC 1 cut(s) 806
BlsI GCNGC 1 cut(s) 807
Bme1390I CCNGG 3 cut(s) 25, 301, 476
BmgT120I GGNCC 1 cut(s) 448
BmiI GGNNCC 1 cut(s) 358
BmrFI CCNGG 3 cut(s) 25, 301, 476
BmrI ACTGGG 1 cut(s) 455
BmtI GCTAGC 1 cut(s) 263
BmuI ACTGGG 1 cut(s) 455
BpuEI CTTGAG 2 cut(s) 556, 680
BpuMI CCSGG 2 cut(s) 301, 476
BsaJI CCNNGG 1 cut(s) 24
BsaWI WCCGGW 1 cut(s) 462
Bsc4I CCNNNNNNNGG 1 cut(s) 513
Bse1I ACTGG 1 cut(s) 450
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 1 cut(s) 513
BseNI ACTGG 1 cut(s) 450
BseRI GAGGAG 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 755
BshFI GGCC 4 cut(s) 63, 450, 494, 714
BshNI GGYRCC 1 cut(s) 356
BsiSI CCGG 3 cut(s) 301, 463, 476
BslFI GGGAC 4 cut(s) 636, 719, 723, 774
BslI CCNNNNNNNGG 1 cut(s) 513
BsmAI GTCTC 3 cut(s) 206, 508, 753
BsmBI CGTCTC 1 cut(s) 206
BsmFI GGGAC 4 cut(s) 636, 719, 723, 774
BsnI GGCC 4 cut(s) 63, 450, 494, 714
Bsp1407I TGTACA 1 cut(s) 13
Bsp143I GATC 4 cut(s) 349, 539, 666, 687
BspACI CCGC 1 cut(s) 755
BspANI GGCC 4 cut(s) 63, 450, 494, 714
BspFNI CGCG 1 cut(s) 755
BspLI GGNNCC 1 cut(s) 358
BspOI GCTAGC 1 cut(s) 263
BspPI GGATC 1 cut(s) 682
BspQI GCTCTTC 1 cut(s) 270
BspT107I GGYRCC 1 cut(s) 356
BspTI CTTAAG 1 cut(s) 275
BsrGI TGTACA 1 cut(s) 13
BsrI ACTGG 1 cut(s) 450
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 4 cut(s) 349, 539, 666, 687
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 3 cut(s) 117, 246, 682
Bst6I CTCTTC 2 cut(s) 73, 270
BstAFI CTTAAG 1 cut(s) 275
BstAUI TGTACA 1 cut(s) 13
BstC8I GCNNGC 3 cut(s) 65, 257, 261
BstDEI CTNAG 1 cut(s) 398
BstF5I GGATG 1 cut(s) 484
BstFNI CGCG 1 cut(s) 755
BstHHI GCGC 1 cut(s) 722
BstKTI GATC 4 cut(s) 352, 542, 669, 690
BstMAI GTCTC 3 cut(s) 206, 508, 753
BstMBI GATC 4 cut(s) 349, 539, 666, 687
BstNI CCWGG 1 cut(s) 25
BstNSI RCATGY 1 cut(s) 651
BstSCI CCNGG 3 cut(s) 23, 299, 474
BstUI CGCG 1 cut(s) 755
BsuRI GGCC 4 cut(s) 63, 450, 494, 714
BtgZI GCGATG 1 cut(s) 526
BtsCI GGATG 1 cut(s) 484
Cac8I GCNNGC 3 cut(s) 65, 257, 261
CfoI GCGC 1 cut(s) 722
Cfr13I GGNCC 1 cut(s) 448
CseI GACGC 1 cut(s) 223
Csp6I GTAC 3 cut(s) 14, 357, 781
CviAII CATG 3 cut(s) 366, 383, 648
CviJI RGCY 9 cut(s) 63, 255, 259, 263, 274, 280, 450, 494, 714
CviKI_1 RGCY 9 cut(s) 63, 255, 259, 263, 274, 280, 450, 494, 714
CviQI GTAC 3 cut(s) 14, 357, 781
DdeI CTNAG 1 cut(s) 398
DpnI GATC 4 cut(s) 351, 541, 668, 689
DpnII GATC 4 cut(s) 349, 539, 666, 687
Eam1104I CTCTTC 2 cut(s) 73, 270
EarI CTCTTC 2 cut(s) 73, 270
Eco147I AGGCCT 1 cut(s) 714
Eco57I CTGAAG 2 cut(s) 251, 785
EcoRII CCWGG 1 cut(s) 23
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 3 cut(s) 369, 386, 651
FaiI YATR 9 cut(s) 134, 166, 206, 367, 373, 384, 422, 649, 764
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FaqI GGGAC 4 cut(s) 636, 719, 723, 774
FatI CATG 3 cut(s) 365, 382, 647
FauI CCCGC 1 cut(s) 748
FblI GTMKAC 1 cut(s) 694
Fnu4HI GCNGC 1 cut(s) 806
FokI GGATG 1 cut(s) 491
Fsp4HI GCNGC 1 cut(s) 806
FspAI RTGCGCAY 1 cut(s) 721
FspBI CTAG 4 cut(s) 260, 431, 500, 629
FspI TGCGCA 1 cut(s) 721
GlaI GCGC 1 cut(s) 721
GluI GCNGC 1 cut(s) 806
HaeIII GGCC 4 cut(s) 63, 450, 494, 714
HapII CCGG 3 cut(s) 301, 463, 476
HgaI GACGC 1 cut(s) 223
HhaI GCGC 1 cut(s) 722
Hin1II CATG 3 cut(s) 369, 386, 651
Hin6I GCGC 1 cut(s) 720
HinP1I GCGC 1 cut(s) 720
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 1 cut(s) 81
HpaII CCGG 3 cut(s) 301, 463, 476
HphI GGTGA 3 cut(s) 446, 537, 676
Hpy166II GTNNAC 2 cut(s) 14, 695
Hpy188I TCNGA 2 cut(s) 270, 534
Hpy188III TCNNGA 3 cut(s) 457, 573, 740
Hpy8I GTNNAC 2 cut(s) 14, 695
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 704
HpyCH4III ACNGT 3 cut(s) 117, 246, 682
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 3 cut(s) 4, 48, 67
HpyF3I CTNAG 1 cut(s) 398
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 3 cut(s) 369, 386, 651
HspAI GCGC 1 cut(s) 720
KpnI GGTACC 1 cut(s) 360
Kzo9I GATC 4 cut(s) 349, 539, 666, 687
LguI GCTCTTC 1 cut(s) 270
MaeI CTAG 4 cut(s) 260, 431, 500, 629
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 117
MalI GATC 4 cut(s) 351, 541, 668, 689
MboI GATC 4 cut(s) 349, 539, 666, 687
MboII GAAGA 2 cut(s) 90, 257
MluCI AATT 7 cut(s) 6, 86, 122, 194, 235, 331, 813
MlyI GAGTC 1 cut(s) 90
MnlI CCTC 7 cut(s) 192, 403, 505, 520, 655, 768, 802
MseI TTAA 4 cut(s) 251, 276, 521, 812
MslI CAYNNNNRTG 1 cut(s) 646
MspCI CTTAAG 1 cut(s) 275
MspI CCGG 3 cut(s) 301, 463, 476
MspR9I CCNGG 3 cut(s) 25, 301, 476
MvaI CCWGG 1 cut(s) 25
MvnI CGCG 1 cut(s) 755
NciI CCSGG 2 cut(s) 301, 476
NdeII GATC 4 cut(s) 349, 539, 666, 687
NheI GCTAGC 1 cut(s) 259
NlaIII CATG 3 cut(s) 369, 386, 651
NlaIV GGNNCC 1 cut(s) 358
NmuCI GTSAC 1 cut(s) 117
NsbI TGCGCA 1 cut(s) 721
NspI RCATGY 1 cut(s) 651
PceI AGGCCT 1 cut(s) 714
PciI ACATGT 1 cut(s) 647
PciSI GCTCTTC 1 cut(s) 270
PflMI CCANNNNNTGG 1 cut(s) 513
PfoI TCCNGGA 1 cut(s) 299
PkrI GCNGC 1 cut(s) 807
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PscI ACATGT 1 cut(s) 647
PsiI TTATAA 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 358
PspPI GGNCC 1 cut(s) 448
RsaI GTAC 3 cut(s) 15, 358, 782
RsaNI GTAC 3 cut(s) 14, 357, 781
RseI CAYNNNNRTG 1 cut(s) 646
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 4 cut(s) 251, 276, 521, 812
SatI GCNGC 1 cut(s) 806
Sau3AI GATC 4 cut(s) 349, 539, 666, 687
Sau96I GGNCC 1 cut(s) 448
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 3 cut(s) 25, 301, 476
SmiMI CAYNNNNRTG 1 cut(s) 646
SmlI CTYRAG 3 cut(s) 275, 571, 659
SmoI CTYRAG 3 cut(s) 275, 571, 659
Sse9I AATT 7 cut(s) 6, 86, 122, 194, 235, 331, 813
SseBI AGGCCT 1 cut(s) 714
SsiI CCGC 1 cut(s) 755
SspMI CTAG 4 cut(s) 260, 431, 500, 629
StuI AGGCCT 1 cut(s) 714
StyD4I CCNGG 3 cut(s) 23, 299, 474
TaaI ACNGT 3 cut(s) 117, 246, 682
TaiI ACGT 1 cut(s) 429
TaqI TCGA 3 cut(s) 309, 669, 686
TasI AATT 7 cut(s) 6, 86, 122, 194, 235, 331, 813
TatI WGTACW 2 cut(s) 13, 780
Tru1I TTAA 4 cut(s) 251, 276, 521, 812
Tru9I TTAA 4 cut(s) 251, 276, 521, 812
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 1 cut(s) 805
Tsp45I GTSAC 1 cut(s) 117
TspDTI ATGAA 4 cut(s) 48, 309, 371, 437
TspGWI ACGGA 2 cut(s) 126, 680
Van91I CCANNNNNTGG 1 cut(s) 513
Vha464I CTTAAG 1 cut(s) 275
XapI RAATTY 1 cut(s) 86
XceI RCATGY 1 cut(s) 651
XmiI GTMKAC 1 cut(s) 694
XspI CTAG 4 cut(s) 260, 431, 500, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.