RchiOBHm_Chr7g0202171
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
19808170 .. 19811805
3636 bp
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UTR
Exon/CDS
Intron
PRQ18099

Sequence Viewer

Length: 150 bp
ATGAAGATAGAGAGAATTGTTAGTTGGCATCCTCTAGTACTGTTCCAGCCTCATAAGATTGATGAACGCATCAAAGAATATGAGGAGTTTCTCCACCTTCCAAGGAAAAGGTTCATTATGTTGCAAAATGGAAGGGTATCACTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000266 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0000919 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005856 GO:0005874 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007049 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009524 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009888 GO:0009920 GO:0009987 GO:0010015 GO:0010026 GO:0010051 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010154 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0030054 GO:0030154 GO:0030276 GO:0031090 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032989 GO:0034357 GO:0042546 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043424 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051301 GO:0055035 GO:0055044 GO:0061458 GO:0061640 GO:0065007 GO:0071554 GO:0071669 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090626 GO:0090627 GO:0098588 GO:0098657 GO:0098805 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0140014 GO:1902410 GO:1903047 GO:1905392 GO:2000114
Pfam Domains
Protein Families

Protein Analysis

49

Amino Acids

6.06

Weight (kDa)

9.81

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 39
AjuI GAANNNNNNNTTGG 2 cut(s) 7, 39
Asp700I GAANNNNTTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 35
BmcAI AGTACT 1 cut(s) 39
BmsI GCATC 2 cut(s) 37, 78
BsaJI CCNNGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 98
BspHI TCATGA 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 101
BssT1I CCWWGG 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 42
BstF5I GGATG 1 cut(s) 28
BtsCI GGATG 1 cut(s) 28
CciI TCATGA 1 cut(s) 146
Csp6I GTAC 1 cut(s) 38
CviAII CATG 1 cut(s) 147
CviJI RGCY 1 cut(s) 49
CviKI_1 RGCY 1 cut(s) 49
CviQI GTAC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 101
FaeI CATG 1 cut(s) 150
FaiI YATR 4 cut(s) 54, 81, 119, 148
FatI CATG 1 cut(s) 146
FokI GGATG 1 cut(s) 15
FspBI CTAG 1 cut(s) 35
Hin1II CATG 1 cut(s) 150
Hpy188III TCNNGA 1 cut(s) 147
HpyAV CCTTC 2 cut(s) 107, 126
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4V TGCA 1 cut(s) 124
Hsp92II CATG 1 cut(s) 150
LpnPI CCDG 1 cut(s) 59
LweI GCATC 2 cut(s) 37, 78
MaeI CTAG 1 cut(s) 35
MboII GAAGA 1 cut(s) 16
MluCI AATT 1 cut(s) 15
MnlI CCTC 3 cut(s) 42, 60, 76
MroXI GAANNNNTTC 1 cut(s) 110
MslI CAYNNNNRTG 1 cut(s) 145
NlaIII CATG 1 cut(s) 150
PagI TCATGA 1 cut(s) 146
PdmI GAANNNNTTC 1 cut(s) 110
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 145
ScaI AGTACT 1 cut(s) 39
SetI ASST 2 cut(s) 99, 113
SfaNI GCATC 2 cut(s) 37, 78
SgeI CNNG 3 cut(s) 47, 58, 114
SmiMI CAYNNNNRTG 1 cut(s) 145
Sse9I AATT 1 cut(s) 15
SspMI CTAG 1 cut(s) 35
StyI CCWWGG 1 cut(s) 101
TaaI ACNGT 1 cut(s) 42
TasI AATT 1 cut(s) 15
TatI WGTACW 1 cut(s) 37
TspDTI ATGAA 4 cut(s) 17, 78, 103, 135
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 1 cut(s) 35
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.