RchiOBHm_Chr7g0203461

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
21175238 .. 21175819
582 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18211

Sequence Viewer

Length: 582 bp
ATGATCCCCACATGTTGGAAATCTAAGCTTCTTAAGGGAGCTACACCTCCAGAACAACAGCTTCAGTCATCAATCCCTCCTCAGATCGGGGACTTGCGTAGGTTGCAAGTATCAAGTCTACAAAATAACTCACTCAGTGACCCTATTCCTGCTAACATATCCAACGACTGTTTCAAGCTCTATTATCTCCATTTCGGTCGCAACAGTCGGGTGGGTGAAATTCCTTTTACACTAGGTTCCTTATCTAAGCTTCAAATATTTGTTTTACAACATAATAAATTAATCCCAACTTCCTTGGGGAACCTTTCATCTCTGGAGGTATTAGTTACATCTAGTAATAACTTGGTGCGAGGCATCCCTAGTTCTTTAGGCCAGTTGAAAAAACTAACGTTTCTGTCATTGGGAGATAATGGTTTGTCTGGTACCAAGCATTCCTCCATCTATAACCTCTCTGCCATTGGTACCTTGTCTGCACTACTAAACCAACTTGAAGGGAGTATTCCCTCAAACTCAAGCAATGCTTTTCCTAACCTCCACGACTATAACATTGCCGCCAATCGTTTTATTGGGGCTATTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

193

Amino Acids

20.87

Weight (kDa)

9.39

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 422, 461
AccB1I GGYRCC 2 cut(s) 422, 461
AccB7I CCANNNNNTGG 1 cut(s) 15
AccI GTMKAC 1 cut(s) 118
AciI CCGC 1 cut(s) 552
AclI AACGTT 1 cut(s) 389
AcsI RAATTY 1 cut(s) 219
AcuI CTGAAG 1 cut(s) 47
AdeI CACNNNGTG 1 cut(s) 137
AfaI GTAC 2 cut(s) 424, 463
AfiI CCNNNNNNNGG 2 cut(s) 15, 86
AflII CTTAAG 1 cut(s) 32
AflIII ACRYGT 1 cut(s) 11
AgsI TTSAA 4 cut(s) 175, 254, 379, 491
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 5 cut(s) 28, 41, 61, 178, 250
AluI AGCT 5 cut(s) 28, 41, 61, 178, 250
AoxI GGCC 1 cut(s) 370
ApoI RAATTY 1 cut(s) 219
AseI ATTAAT 1 cut(s) 281
Asp718I GGTACC 2 cut(s) 422, 461
AsuHPI GGTGA 1 cut(s) 227
BanI GGYRCC 2 cut(s) 422, 461
BccI CCATC 1 cut(s) 446
BfaI CTAG 4 cut(s) 233, 333, 360, 580
BfrI CTTAAG 1 cut(s) 32
BisI GCNGC 1 cut(s) 552
BlsI GCNGC 1 cut(s) 553
BmiI GGNNCC 4 cut(s) 238, 302, 424, 463
BmsI GCATC 1 cut(s) 363
BpmI CTGGAG 2 cut(s) 33, 335
BpuEI CTTGAG 1 cut(s) 496
BsaJI CCNNGG 1 cut(s) 294
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 86
Bse1I ACTGG 1 cut(s) 373
Bse3DI GCAATG 2 cut(s) 523, 546
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 354
BseLI CCNNNNNNNGG 2 cut(s) 15, 86
BseMI GCAATG 2 cut(s) 523, 546
BseMII CTCAG 2 cut(s) 95, 148
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 1 cut(s) 69
BsgI GTGCAG 1 cut(s) 456
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 1 cut(s) 372
BshNI GGYRCC 2 cut(s) 422, 461
BsiEI CGRYCG 1 cut(s) 199
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 2 cut(s) 15, 86
BsmFI GGGAC 1 cut(s) 104
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 1 cut(s) 372
Bsp143I GATC 2 cut(s) 3, 84
BspACI CCGC 1 cut(s) 552
BspANI GGCC 1 cut(s) 372
BspCNI CTCAG 2 cut(s) 94, 147
BspLI GGNNCC 4 cut(s) 238, 302, 424, 463
BspT107I GGYRCC 2 cut(s) 422, 461
BspTI CTTAAG 1 cut(s) 32
BsrDI GCAATG 2 cut(s) 523, 546
BsrI ACTGG 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 2 cut(s) 3, 84
BssT1I CCWWGG 1 cut(s) 294
Bst4CI ACNGT 2 cut(s) 170, 206
BstAFI CTTAAG 1 cut(s) 32
BstDEI CTNAG 4 cut(s) 24, 81, 134, 246
BstF5I GGATG 1 cut(s) 354
BstKTI GATC 2 cut(s) 6, 87
BstMBI GATC 2 cut(s) 3, 84
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 15
BsuRI GGCC 1 cut(s) 372
BtsCI GGATG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 142
Csp6I GTAC 2 cut(s) 423, 462
CviAII CATG 1 cut(s) 12
CviJI RGCY 7 cut(s) 28, 41, 61, 178, 250, 372, 572
CviKI_1 RGCY 7 cut(s) 28, 41, 61, 178, 250, 372, 572
CviQI GTAC 2 cut(s) 423, 462
DdeI CTNAG 4 cut(s) 24, 81, 134, 246
DpnI GATC 2 cut(s) 5, 86
DpnII GATC 2 cut(s) 3, 84
DraIII CACNNNGTG 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 47
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 1 cut(s) 15
FaiI YATR 5 cut(s) 13, 158, 273, 444, 543
FalI AAGNNNNNCTT 2 cut(s) 505, 537
FaqI GGGAC 1 cut(s) 104
FatI CATG 1 cut(s) 11
FblI GTMKAC 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 552
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 552
FspBI CTAG 4 cut(s) 233, 333, 360, 580
GluI GCNGC 1 cut(s) 552
GsuI CTGGAG 2 cut(s) 33, 335
HaeIII GGCC 1 cut(s) 372
Hin1II CATG 1 cut(s) 15
HindIII AAGCTT 2 cut(s) 26, 248
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 2 cut(s) 50, 314
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 485
HpyCH4III ACNGT 2 cut(s) 170, 206
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 2 cut(s) 106, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 4 cut(s) 24, 81, 134, 246
HpySE526I ACGT 1 cut(s) 389
Hsp92II CATG 1 cut(s) 15
KpnI GGTACC 2 cut(s) 426, 465
Kzo9I GATC 2 cut(s) 3, 84
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 5 cut(s) 63, 162, 299, 386, 405
LweI GCATC 1 cut(s) 363
MaeI CTAG 4 cut(s) 233, 333, 360, 580
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 2 cut(s) 137, 325
MalI GATC 2 cut(s) 5, 86
MboI GATC 2 cut(s) 3, 84
MluCI AATT 2 cut(s) 219, 278
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 9 cut(s) 57, 87, 90, 310, 344, 445, 458, 514, 542
MseI TTAA 2 cut(s) 33, 281
MspCI CTTAAG 1 cut(s) 32
Mva1269I GAATGC 1 cut(s) 430
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeII GATC 2 cut(s) 3, 84
NlaIII CATG 1 cut(s) 15
NlaIV GGNNCC 4 cut(s) 238, 302, 424, 463
NmuCI GTSAC 1 cut(s) 137
NspI RCATGY 1 cut(s) 15
PciI ACATGT 1 cut(s) 11
PctI GAATGC 1 cut(s) 430
PflMI CCANNNNNTGG 1 cut(s) 15
PkrI GCNGC 1 cut(s) 553
PscI ACATGT 1 cut(s) 11
PshBI ATTAAT 1 cut(s) 281
Psp1406I AACGTT 1 cut(s) 389
PspN4I GGNNCC 4 cut(s) 238, 302, 424, 463
RsaI GTAC 2 cut(s) 424, 463
RsaNI GTAC 2 cut(s) 423, 462
SaqAI TTAA 2 cut(s) 33, 281
SatI GCNGC 1 cut(s) 552
Sau3AI GATC 2 cut(s) 3, 84
SfaNI GCATC 1 cut(s) 363
SmlI CTYRAG 2 cut(s) 32, 511
SmoI CTYRAG 2 cut(s) 32, 511
Sse9I AATT 2 cut(s) 219, 278
SsiI CCGC 1 cut(s) 552
SspI AATATT 1 cut(s) 258
SspMI CTAG 4 cut(s) 233, 333, 360, 580
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 2 cut(s) 170, 206
TaiI ACGT 1 cut(s) 392
TaqII GACCGA 1 cut(s) 185
TasI AATT 2 cut(s) 219, 278
TauI GCSGC 1 cut(s) 554
Tru1I TTAA 2 cut(s) 33, 281
Tru9I TTAA 2 cut(s) 33, 281
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 297
TspRI CASTG 1 cut(s) 142
Van91I CCANNNNNTGG 1 cut(s) 15
Vha464I CTTAAG 1 cut(s) 32
VspI ATTAAT 1 cut(s) 281
XapI RAATTY 1 cut(s) 219
XceI RCATGY 1 cut(s) 15
XmiI GTMKAC 1 cut(s) 118
XspI CTAG 4 cut(s) 233, 333, 360, 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.