RchiOBHm_Chr7g0207691
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
24938761 .. 24940805
2045 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18586

Sequence Viewer

Length: 555 bp
ATGGGTTCAGTCCTCCCCAATCTCTCTTTCCTTGTGCCTCTGCTGATGCTTCCAGGGAAGCCTTCATGTACTGTGACAAGAAACCTTGTGCCATTCCAAGAGCTCAGGGATTCAACCAATGGCTTCAGCAGGTCGCAAAAGCTTGGTGAAGGAGGCTTTGGGAGTGTGTATAAAGGAATAATCAAGCCCAAAAATGGCAAGGGTAGTCCAATTTTTGTTGCCATAAAGAAGTTGAATCCACATAGCTTACAGTCTTGGATGTTGAATGATTGTGATGATAGCATTGAATGTTCGGTGGAATATGACAATTGTGGACCTTGGAATCCATCTGGTGCTGGAACTCTAGGAATGTGGAGATTATATCATCATTTGTATTGTCAAGCTTATGGTTCTTTGCTGTTTTCATATGGTCATAAAGAGTGGCTAGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCTAGGATATTGCTCTATAGATGGAGAAAGAGGGATCCAACGGCTATTGGTATATGAATATATGCCTAATAGTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

184

Amino Acids

20.47

Weight (kDa)

8.19

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 120
AclWI GGATC 2 cut(s) 505, 518
AcuI CTGAAG 1 cut(s) 109
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 2 cut(s) 194, 466
AgsI TTSAA 5 cut(s) 114, 235, 265, 287, 437
AjnI CCWGG 1 cut(s) 52
AjuI GAANNNNNNNTTGG 4 cut(s) 11, 43, 141, 173
AluBI AGCT 5 cut(s) 103, 142, 246, 383, 475
AluI AGCT 5 cut(s) 103, 142, 246, 383, 475
Alw21I GWGCWC 1 cut(s) 105
AlwI GGATC 2 cut(s) 505, 518
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 2 cut(s) 158, 449
AsuNHI GCTAGC 1 cut(s) 424
AvaII GGWCC 1 cut(s) 314
BamHI GGATCC 1 cut(s) 510
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BccI CCATC 2 cut(s) 334, 491
BceAI ACGGC 1 cut(s) 533
BciT130I CCWGG 1 cut(s) 54
BfaI CTAG 3 cut(s) 344, 425, 479
BfmI CTRYAG 1 cut(s) 492
BfuAI ACCTGC 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 1 cut(s) 512
BmrFI CCNGG 1 cut(s) 54
BmsI GCATC 1 cut(s) 36
BmtI GCTAGC 1 cut(s) 428
Bpu10I CCTNAGC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 53, 317
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 466
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 2 cut(s) 53, 317
BseGI GGATG 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 194, 466
BseMII CTCAG 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 105
BslI CCNNNNNNNGG 2 cut(s) 194, 466
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 510
BspCNI CTCAG 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 512
BspMI ACCTGC 1 cut(s) 120
BspOI GCTAGC 1 cut(s) 428
BspPI GGATC 2 cut(s) 505, 518
BssECI CCNNGG 2 cut(s) 53, 317
BssMI GATC 1 cut(s) 510
BssT1I CCWWGG 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 73, 252
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 264
BstKTI GATC 1 cut(s) 513
BstMBI GATC 1 cut(s) 510
BstNI CCWGG 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 52
BstSFI CTRYAG 1 cut(s) 492
BstX2I RGATCY 1 cut(s) 510
BstYI RGATCY 1 cut(s) 510
BtsCI GGATG 1 cut(s) 264
BveI ACCTGC 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 426
Cfr13I GGNCC 1 cut(s) 314
Csp6I GTAC 1 cut(s) 69
CviAII CATG 1 cut(s) 66
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 512
DpnII GATC 1 cut(s) 510
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 317
Eco24I GRGCYC 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 317
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 317
FaeI CATG 1 cut(s) 69
FatI CATG 1 cut(s) 65
FauNDI CATATG 1 cut(s) 406
FokI GGATG 1 cut(s) 271
FriOI GRGCYC 1 cut(s) 105
FspBI CTAG 3 cut(s) 344, 425, 479
Hin1II CATG 1 cut(s) 69
HindIII AAGCTT 3 cut(s) 140, 381, 473
HinfI GANTC 3 cut(s) 110, 235, 322
HphI GGTGA 2 cut(s) 158, 449
Hpy166II GTNNAC 1 cut(s) 314
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 2 cut(s) 72, 143
HpyCH4III ACNGT 2 cut(s) 73, 252
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 1 cut(s) 69
Kzo9I GATC 1 cut(s) 510
LpnPI CCDG 7 cut(s) 39, 66, 91, 115, 315, 321, 452
LweI GCATC 1 cut(s) 36
MaeI CTAG 3 cut(s) 344, 425, 479
MaeIII GTNAC 1 cut(s) 73
MalI GATC 1 cut(s) 512
MboI GATC 1 cut(s) 510
MfeI CAATTG 1 cut(s) 307
MflI RGATCY 1 cut(s) 510
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 3 cut(s) 210, 307, 437
MmeI TCCRAC 1 cut(s) 538
MnlI CCTC 5 cut(s) 23, 48, 146, 424, 500
MspR9I CCNGG 1 cut(s) 54
MunI CAATTG 1 cut(s) 307
MvaI CCWGG 1 cut(s) 54
NdeI CATATG 1 cut(s) 406
NdeII GATC 1 cut(s) 510
NheI GCTAGC 1 cut(s) 424
NlaIII CATG 1 cut(s) 69
NlaIV GGNNCC 1 cut(s) 512
NmuCI GTSAC 1 cut(s) 73
PfeI GAWTC 3 cut(s) 110, 235, 322
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 512
PspPI GGNCC 1 cut(s) 314
PsuI RGATCY 1 cut(s) 510
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SacI GAGCTC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 510
Sau96I GGNCC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 54
SduI GDGCHC 1 cut(s) 105
SetI ASST 9 cut(s) 87, 105, 134, 144, 248, 319, 385, 435, 477
SfaNI GCATC 1 cut(s) 36
SfcI CTRYAG 1 cut(s) 492
SinI GGWCC 1 cut(s) 314
Sse9I AATT 3 cut(s) 210, 307, 437
SspMI CTAG 3 cut(s) 344, 425, 479
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 52
StyI CCWWGG 1 cut(s) 317
TaaI ACNGT 2 cut(s) 73, 252
TasI AATT 3 cut(s) 210, 307, 437
TatI WGTACW 1 cut(s) 68
TfiI GAWTC 3 cut(s) 110, 235, 322
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 3 cut(s) 54, 393, 546
VpaK11BI GGWCC 1 cut(s) 314
XspI CTAG 3 cut(s) 344, 425, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.