RchiOBHm_Chr7g0207771

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
25018794 .. 25019243
450 bp
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UTR
Exon/CDS
Intron
PRQ18594

Sequence Viewer

Length: 450 bp
ATGCAATTTCAAGAATTGCAAGTGTTGAATTTGGGAAAGAATAAATTATCTGGAAAAATACCAATAGGCAATCCAGAGCCTTGCGTTATTGCTTTTAAAGGTAACAACTTTTCAGGAGAATTGCCTTCTTTAGAGAACTGTACCAACTTATTGATGGTTGACCTTGGCAACAATAACTTGTCGGGAAAGATACCAATATGGATTGGCCAAAGTTTAACAAACTTGGTGATTCTAACCTTACGGTCCAATCAGTTCAATGGAATCATACCCTTCTCCCTGTGCAGTCTAGTCACCATTCATGTTTTGGACCTCTCTCACAACAATATTTCAGGAGGCTTGCCACATTGCTTCAGTAACATAACTTCTTTGGCTGATGATTCGAGATTTGATGGTTTTATTGTGGAACTTGTGTGGAAAAGAATAGAAATTGAGTGGGGGAAAAAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

149

Amino Acids

16.43

Weight (kDa)

6.26

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_ComC PF24141 2 - 96 2.4e-08 EGF-like domain-containing protein ComC LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 334
AfaI GTAC 1 cut(s) 142
AgsI TTSAA 3 cut(s) 11, 28, 256
AoxI GGCC 1 cut(s) 205
ApoI RAATTY 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 243, 307
AsuHPI GGTGA 2 cut(s) 238, 283
AvaII GGWCC 2 cut(s) 243, 307
BalI TGGCCA 1 cut(s) 207
BarI GAAGNNNNNNTAC 2 cut(s) 346, 378
BccI CCATC 2 cut(s) 148, 383
BfaI CTAG 1 cut(s) 287
Bme18I GGWCC 2 cut(s) 243, 307
BmgT120I GGNCC 2 cut(s) 243, 307
BsaJI CCNNGG 1 cut(s) 163
Bse3DI GCAATG 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 163
BseMI GCAATG 1 cut(s) 343
BsgI GTGCAG 1 cut(s) 301
BshFI GGCC 1 cut(s) 207
BsnI GGCC 1 cut(s) 207
BspANI GGCC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 343
BssECI CCNNGG 1 cut(s) 163
BssT1I CCWWGG 1 cut(s) 163
Bst4CI ACNGT 2 cut(s) 140, 243
BstC8I GCNNGC 1 cut(s) 338
BsuRI GGCC 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 243, 307
Csp6I GTAC 1 cut(s) 141
CviAII CATG 1 cut(s) 299
CviJI RGCY 4 cut(s) 79, 207, 336, 371
CviKI_1 RGCY 4 cut(s) 79, 207, 336, 371
CviQI GTAC 1 cut(s) 141
DraI TTTAAA 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 163
Eco47I GGWCC 2 cut(s) 243, 307
Eco57I CTGAAG 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 1 cut(s) 302
FaiI YATR 4 cut(s) 199, 266, 300, 359
FatI CATG 1 cut(s) 298
FspBI CTAG 1 cut(s) 287
HaeIII GGCC 1 cut(s) 207
Hin1II CATG 1 cut(s) 302
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 3 cut(s) 229, 261, 377
HphI GGTGA 2 cut(s) 238, 283
Hpy166II GTNNAC 1 cut(s) 160
Hpy188III TCNNGA 7 cut(s) 11, 51, 74, 114, 183, 330, 381
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 2 cut(s) 135, 280
HpyCH4III ACNGT 2 cut(s) 140, 243
HpyCH4V TGCA 3 cut(s) 4, 19, 282
Hsp92II CATG 1 cut(s) 302
LpnPI CCDG 5 cut(s) 36, 87, 99, 290, 315
MaeI CTAG 1 cut(s) 287
MaeIII GTNAC 3 cut(s) 101, 289, 353
MlsI TGGCCA 1 cut(s) 207
MluCI AATT 6 cut(s) 5, 14, 28, 44, 119, 426
MluNI TGGCCA 1 cut(s) 207
MnlI CCTC 2 cut(s) 320, 326
Mox20I TGGCCA 1 cut(s) 207
MscI TGGCCA 1 cut(s) 207
MseI TTAA 3 cut(s) 96, 215, 448
Msp20I TGGCCA 1 cut(s) 207
NlaIII CATG 1 cut(s) 302
NmuCI GTSAC 1 cut(s) 289
PfeI GAWTC 3 cut(s) 229, 261, 377
PspPI GGNCC 2 cut(s) 243, 307
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SaqAI TTAA 3 cut(s) 96, 215, 448
Sau96I GGNCC 2 cut(s) 243, 307
SetI ASST 4 cut(s) 103, 165, 239, 312
SinI GGWCC 2 cut(s) 243, 307
Sse9I AATT 6 cut(s) 5, 14, 28, 44, 119, 426
SspI AATATT 1 cut(s) 325
SspMI CTAG 1 cut(s) 287
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 2 cut(s) 140, 243
TaqI TCGA 1 cut(s) 380
TasI AATT 6 cut(s) 5, 14, 28, 44, 119, 426
TfiI GAWTC 3 cut(s) 229, 261, 377
Tru1I TTAA 3 cut(s) 96, 215, 448
Tru9I TTAA 3 cut(s) 96, 215, 448
TseFI GTSAC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 1 cut(s) 287
VpaK11BI GGWCC 2 cut(s) 243, 307
XapI RAATTY 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 2 cut(s) 151, 301
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.