RchiOBHm_Chr7g0224521

SCY1-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
46717582 .. 46719831
2250 bp
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UTR
Exon/CDS
Intron
PRQ20105

Sequence Viewer

Length: 300 bp
ATGTACATGAATACCTTAAGTTACTTATCTAGTGAAGCCTTCTCCTCTATTCCTCCCGAGTTAGTTCCTGACTTGCAAAGGATGATCTCTACAAATGAGTCTTTCAGGCCAACAGCAATTGATTTTACAGGAGAAGACTTCCTTGTAGCTCCTTTGAAGAGGAAAAAAGGTTGCATGGAAAGAATCTCTGATCCATACGAGAGGGAAAAGAGGCAGACTGGTATTGAAAGCCATTTTTTTTGTTTTTGGCATTGGAGGAATTTGGATGTTCAAACACATTGTAAAGAGATGGCACCGTGA

Protein Analysis

99

Amino Acids

11.67

Weight (kDa)

5.88

Isoelectric Point (pI)

52.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 292
AclWI GGATC 1 cut(s) 185
AcsI RAATTY 1 cut(s) 259
AfaI GTAC 1 cut(s) 5
AflII CTTAAG 1 cut(s) 16
AgsI TTSAA 3 cut(s) 157, 227, 272
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
AlwI GGATC 1 cut(s) 185
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 56
BanI GGYRCC 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 141
BccI CCATC 1 cut(s) 283
BfaI CTAG 1 cut(s) 30
BfrI CTTAAG 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 223
BseGI GGATG 2 cut(s) 87, 271
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 34
BshFI GGCC 1 cut(s) 109
BshNI GGYRCC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 56
BsnI GGCC 1 cut(s) 109
BsoBI CYCGRG 1 cut(s) 56
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 84, 190
BspANI GGCC 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 294
BspPI GGATC 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 292
BspTI CTTAAG 1 cut(s) 16
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 223
BssMI GATC 2 cut(s) 84, 190
Bst4CI ACNGT 1 cut(s) 297
Bst6I CTCTTC 1 cut(s) 152
BstAFI CTTAAG 1 cut(s) 16
BstAUI TGTACA 1 cut(s) 3
BstF5I GGATG 2 cut(s) 87, 271
BstKTI GATC 2 cut(s) 87, 193
BstMBI GATC 2 cut(s) 84, 190
BstV2I GAAGAC 1 cut(s) 141
BsuRI GGCC 1 cut(s) 109
BtsCI GGATG 2 cut(s) 87, 271
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 7, 175
CviJI RGCY 4 cut(s) 38, 109, 149, 231
CviKI_1 RGCY 4 cut(s) 38, 109, 149, 231
CviQI GTAC 1 cut(s) 4
DpnI GATC 2 cut(s) 86, 192
DpnII GATC 2 cut(s) 84, 190
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 56
FaeI CATG 2 cut(s) 10, 178
FaiI YATR 3 cut(s) 8, 176, 196
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FatI CATG 2 cut(s) 6, 174
FokI GGATG 2 cut(s) 94, 278
FspBI CTAG 1 cut(s) 30
HaeIII GGCC 1 cut(s) 109
Hin1II CATG 2 cut(s) 10, 178
HinfI GANTC 2 cut(s) 98, 183
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 2 cut(s) 56, 68
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4V TGCA 2 cut(s) 76, 174
Hsp92II CATG 2 cut(s) 10, 178
Kzo9I GATC 2 cut(s) 84, 190
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 4 cut(s) 81, 91, 114, 204
MaeI CTAG 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 20
MalI GATC 2 cut(s) 86, 192
MboI GATC 2 cut(s) 84, 190
MboII GAAGA 2 cut(s) 146, 169
MfeI CAATTG 1 cut(s) 117
MluCI AATT 2 cut(s) 117, 259
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 6 cut(s) 55, 63, 153, 195, 204, 249
MseI TTAA 1 cut(s) 17
MspCI CTTAAG 1 cut(s) 16
MunI CAATTG 1 cut(s) 117
NdeII GATC 2 cut(s) 84, 190
NlaIII CATG 2 cut(s) 10, 178
NlaIV GGNNCC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 183
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 294
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 17
Sau3AI GATC 2 cut(s) 84, 190
SchI GAGTC 1 cut(s) 107
SetI ASST 3 cut(s) 17, 151, 172
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 2 cut(s) 117, 259
SspMI CTAG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 297
TasI AATT 2 cut(s) 117, 259
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 23
Vha464I CTTAAG 1 cut(s) 16
XapI RAATTY 1 cut(s) 259
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.