Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

50648896 .. 50649196

Gene Structure 301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20369

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGGGAAGCATCTACCACATCAATCTGGTTAGCTTGAGCGGTTTCTGCATCCAAGGAAGCCAGTGTTTTCTGGCTTATGAGTATATGAATAGAGGTTCATTGGAGAAGATTCTCTTTGGCAACGGCCCTGTTTTGGATTGGGAAAAAAGATATGGGATAGCGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

55

Amino Acids

6.2

Weight (kDa)

6.52

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 51	9.8e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	39
AciI	CCGC	1 cut(s)	39
AfeI	AGCGCT	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	133
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Aor51HI	AGCGCT	1 cut(s)	162
AoxI	GGCC	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	139
BfoI	RGCGCY	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	125
BmsI	GCATC	2 cut(s)	18, 57
BpuEI	CTTGAG	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	133
BsnI	GGCC	1 cut(s)	126
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	52
BssT1I	CCWWGG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	68
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	125
CviJI	RGCY	4 cut(s)	33, 60, 74, 126
CviKI_1	RGCY	4 cut(s)	33, 60, 74, 126
Eco130I	CCWWGG	1 cut(s)	52
Eco47III	AGCGCT	1 cut(s)	162
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaiI	YATR	5 cut(s)	78, 84, 86, 153, 166
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FokI	GGATG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	162
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	126
HhaI	GCGC	1 cut(s)	163
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HspAI	GCGC	1 cut(s)	161
LpnPI	CCDG	4 cut(s)	11, 56, 74, 141
LweI	GCATC	2 cut(s)	18, 57
MbiI	CCGCTC	1 cut(s)	39
MboII	GAAGA	1 cut(s)	118
MnlI	CCTC	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	125
Sau96I	GGNCC	1 cut(s)	125
SetI	ASST	2 cut(s)	35, 97
SfaNI	GCATC	2 cut(s)	18, 57
SgeI	CNNG	6 cut(s)	38, 46, 65, 73, 83, 140
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
SsiI	CCGC	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	109
TscAI	CASTG	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	87, 101
TspRI	CASTG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.