RLG00000000782

LRR receptor-like serine threonine-protein kinase At4g08850

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
N/A
Physical Location & Seq
Reverse (-)
5375680 .. 5377094
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000782

Sequence Viewer

Length: 1092 bp
ATGAACTCAATCTTTGGTACCATTCCACCTGAAATCAGTCGACTCGCCAAATTAGTGTATCTTGATTTGTCCGGTAATAAGTTAAATGGTTCAGTTCCAGCTTCTTTGGGAAACCTTAGTAGTATTGCTTACTTGAATATAGGTAGGAGCTTCCTTGCTAGTTCAGTTCCTTTAGAAATAGGAAGTCTTACGCAGTTGGTAGAGCTTTACTTGAATACCAATAATCTTACAAGTCAGATCCCACAAACTCTTGGGAACTTAAGAAAGCTAAAAGTACTATACATGTTTGAGAACATATTTGTTAGTTCCATTCCCCTGGAGATAGGAAAGTTGGCATCTCTGAACAATCTAAGCCTTCACACCAACAACTTTTCTGGAAGTATCCCGGATTCCATATATGAGCTAAGACACCTTACGACACTCAAACTGCATCGAAACAATTTTTCAGGTCCAATTCCAAAAAATATTGGAAGCTTGAAGTCTCTTGTTGTTCTAAATGTATGTGAGACTCAACTCAGTGGTCCTATTCCCATGTCAATTCGTAACATGATCAAGTTACAGTTCACTGGAAATATATCTAAAGATTTTGGTGGATATTCAAACTTGGGTTACATAAATCGTTGTGACAATAATTTTTATGGTGAACTTTTGGAGAAATGGGGAAAGTCTCTGCTGCTAACGGTTCTTGAGATTGCAGTTGGGACAATCCCTATTGGACTAGGAAAGTTGACCTCTTTGGTGAGGCTTATACTGAATGACAATCAACTTTCTGGTGCCATATCTCACGAAATTGGATCACTGATTGACCTTGAATTTCTTGACCTATCCAAAAACAATTTGAGCCAGTCGATTCCTAGTAGTCTGGGGAACCTTGTGAAAGTGCACCACCTGAACTTGAGCAACAACAAGTTGAGCCATGGAACCCTAAGTAAGTTGGGTCAGTTGAAGCAGCTGTCTGTGCTAGATTTGAGTCATAATTTTCTTAGTGAAGAGATACCAACAGAGTTCTCTAATCTGGGAAGCTTGTTGACCCTGACTTTTGCTGACCTTCATGGCTTGGAGCTCATTGACATATCATACAATCGATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8 Pkinase RVT_2

Protein Analysis

364

Amino Acids

39.71

Weight (kDa)

7.79

Isoelectric Point (pI)

26.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 7 - 95 7.4e-10 Leucine-rich repeat region
LRR_14 PF23598 101 - 170 1e-08 Leucine-rich repeat region
LRR_14 PF23598 240 - 346 8.3e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 17
AccB1I GGYRCC 2 cut(s) 17, 773
AccI GTMKAC 1 cut(s) 40
AclWI GGATC 2 cut(s) 232, 802
AcsI RAATTY 1 cut(s) 812
AfaI GTAC 2 cut(s) 19, 276
AflII CTTAAG 1 cut(s) 259
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 6 cut(s) 136, 214, 478, 600, 812, 946
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 9 cut(s) 101, 150, 205, 268, 403, 474, 952, 1023, 1063
AluI AGCT 9 cut(s) 101, 150, 205, 268, 403, 474, 952, 1023, 1063
Alw21I GWGCWC 2 cut(s) 885, 1065
Alw26I GTCTC 3 cut(s) 486, 500, 672
Alw44I GTGCAC 1 cut(s) 881
AlwI GGATC 2 cut(s) 232, 802
ApaLI GTGCAC 1 cut(s) 881
ApeKI GCWGC 2 cut(s) 673, 949
ApoI RAATTY 1 cut(s) 812
Asp718I GGTACC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 449, 521
AsuC2I CCSGG 1 cut(s) 386
AsuHPI GGTGA 2 cut(s) 653, 751
AvaII GGWCC 2 cut(s) 449, 521
BaeGI GKGCMC 1 cut(s) 885
BanI GGYRCC 2 cut(s) 17, 773
BanII GRGCYC 1 cut(s) 1065
Bbv12I GWGCWC 2 cut(s) 885, 1065
BbvI GCAGC 2 cut(s) 660, 961
BciT130I CCWGG 1 cut(s) 317
BciVI GTATCC 1 cut(s) 392
BclI TGATCA 1 cut(s) 549
BcnI CCSGG 1 cut(s) 386
BcoDI GTCTC 3 cut(s) 486, 500, 672
BfaI CTAG 4 cut(s) 159, 719, 855, 962
BfrI CTTAAG 1 cut(s) 259
BfuI GTATCC 1 cut(s) 392
BisI GCNGC 2 cut(s) 674, 950
BlsI GCNGC 2 cut(s) 675, 951
BmcAI AGTACT 1 cut(s) 276
Bme1390I CCNGG 2 cut(s) 317, 386
Bme18I GGWCC 2 cut(s) 449, 521
BmgT120I GGNCC 2 cut(s) 449, 521
BmiI GGNNCC 4 cut(s) 19, 775, 869, 922
BmrFI CCNGG 2 cut(s) 317, 386
BmsI GCATC 2 cut(s) 344, 439
BpmI CTGGAG 1 cut(s) 338
BpuEI CTTGAG 2 cut(s) 707, 916
BpuMI CCSGG 1 cut(s) 386
Bsa29I ATCGAT 1 cut(s) 1084
BsaJI CCNNGG 2 cut(s) 315, 916
BsaWI WCCGGW 1 cut(s) 71
Bse1I ACTGG 2 cut(s) 571, 844
BseBI CCWGG 1 cut(s) 317
BseCI ATCGAT 1 cut(s) 1084
BseDI CCNNGG 2 cut(s) 315, 916
BseMII CTCAG 1 cut(s) 529
BseNI ACTGG 2 cut(s) 571, 844
BseSI GKGCMC 1 cut(s) 885
BseXI GCAGC 2 cut(s) 660, 961
BshNI GGYRCC 2 cut(s) 17, 773
BshVI ATCGAT 1 cut(s) 1084
BsiHKAI GWGCWC 2 cut(s) 885, 1065
BsiSI CCGG 2 cut(s) 72, 386
BslFI GGGAC 1 cut(s) 715
BsmAI GTCTC 3 cut(s) 486, 500, 672
BsmFI GGGAC 1 cut(s) 715
Bsp1286I GDGCHC 2 cut(s) 885, 1065
Bsp143I GATC 3 cut(s) 237, 549, 794
Bsp19I CCATGG 1 cut(s) 916
BspCNI CTCAG 1 cut(s) 528
BspDI ATCGAT 1 cut(s) 1084
BspLI GGNNCC 4 cut(s) 19, 775, 869, 922
BspPI GGATC 2 cut(s) 232, 802
BspT107I GGYRCC 2 cut(s) 17, 773
BspTI CTTAAG 1 cut(s) 259
BsrI ACTGG 2 cut(s) 571, 844
BssECI CCNNGG 2 cut(s) 315, 916
BssMI GATC 3 cut(s) 237, 549, 794
BssT1I CCWWGG 1 cut(s) 916
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 2 cut(s) 561, 682
Bst6I CTCTTC 1 cut(s) 984
BstAFI CTTAAG 1 cut(s) 259
BstDEI CTNAG 6 cut(s) 116, 350, 404, 515, 926, 983
BstDSI CCRYGG 1 cut(s) 916
BstKTI GATC 3 cut(s) 240, 552, 797
BstMAI GTCTC 3 cut(s) 486, 500, 672
BstMBI GATC 3 cut(s) 237, 549, 794
BstMWI GCNNNNNNNGC 1 cut(s) 958
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 2 cut(s) 315, 384
BstSLI GKGCMC 1 cut(s) 885
BstV1I GCAGC 2 cut(s) 660, 961
BstX2I RGATCY 1 cut(s) 237
BstXI CCANNNNNNTGG 1 cut(s) 316
BstYI RGATCY 1 cut(s) 237
Bsu15I ATCGAT 1 cut(s) 1084
BsuI GTATCC 1 cut(s) 392
BsuTUI ATCGAT 1 cut(s) 1084
BtgI CCRYGG 1 cut(s) 916
BtsIMutI CAGTG 3 cut(s) 523, 564, 797
Cfr13I GGNCC 2 cut(s) 449, 521
ClaI ATCGAT 1 cut(s) 1084
Csp6I GTAC 2 cut(s) 18, 275
CviAII CATG 5 cut(s) 283, 532, 547, 917, 1052
CviQI GTAC 2 cut(s) 18, 275
DdeI CTNAG 6 cut(s) 116, 350, 404, 515, 926, 983
DpnI GATC 3 cut(s) 239, 551, 796
DpnII GATC 3 cut(s) 237, 549, 794
Eam1104I CTCTTC 1 cut(s) 984
EarI CTCTTC 1 cut(s) 984
Ecl136II GAGCTC 1 cut(s) 1063
Eco130I CCWWGG 1 cut(s) 916
Eco24I GRGCYC 1 cut(s) 1065
Eco47I GGWCC 2 cut(s) 449, 521
Eco53kI GAGCTC 1 cut(s) 1063
EcoICRI GAGCTC 1 cut(s) 1063
EcoRII CCWGG 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 916
EcoT38I GRGCYC 1 cut(s) 1065
ErhI CCWWGG 1 cut(s) 916
FaeI CATG 5 cut(s) 286, 535, 550, 920, 1055
FaqI GGGAC 1 cut(s) 715
FatI CATG 5 cut(s) 282, 531, 546, 916, 1051
FbaI TGATCA 1 cut(s) 549
FblI GTMKAC 1 cut(s) 40
Fnu4HI GCNGC 2 cut(s) 674, 950
FriOI GRGCYC 1 cut(s) 1065
Fsp4HI GCNGC 2 cut(s) 674, 950
FspBI CTAG 4 cut(s) 159, 719, 855, 962
GluI GCNGC 2 cut(s) 674, 950
GsuI CTGGAG 1 cut(s) 338
HapII CCGG 2 cut(s) 72, 386
Hin1II CATG 5 cut(s) 286, 535, 550, 920, 1055
HincII GTYRAC 3 cut(s) 41, 729, 1029
HindII GTYRAC 3 cut(s) 41, 729, 1029
HindIII AAGCTT 2 cut(s) 472, 1021
HinfI GANTC 5 cut(s) 42, 389, 508, 850, 970
HpaII CCGG 2 cut(s) 72, 386
HphI GGTGA 2 cut(s) 653, 751
Hpy166II GTNNAC 6 cut(s) 41, 564, 644, 729, 883, 1029
Hpy188I TCNGA 2 cut(s) 237, 342
Hpy188III TCNNGA 5 cut(s) 62, 375, 686, 785, 818
Hpy8I GTNNAC 6 cut(s) 41, 564, 644, 729, 883, 1029
HpyAV CCTTC 2 cut(s) 365, 1058
HpyCH4III ACNGT 2 cut(s) 561, 682
HpyCH4V TGCA 3 cut(s) 430, 695, 883
HpyF10VI GCNNNNNNNGC 1 cut(s) 958
HpyF3I CTNAG 6 cut(s) 116, 350, 404, 515, 926, 983
Hsp92II CATG 5 cut(s) 286, 535, 550, 920, 1055
KpnI GGTACC 1 cut(s) 21
Ksp22I TGATCA 1 cut(s) 549
Kzo9I GATC 3 cut(s) 237, 549, 794
LmnI GCTCC 2 cut(s) 147, 1060
Lsp1109I GCAGC 2 cut(s) 660, 961
LweI GCATC 2 cut(s) 344, 439
MaeI CTAG 4 cut(s) 159, 719, 855, 962
MaeIII GTNAC 4 cut(s) 542, 555, 608, 623
MalI GATC 3 cut(s) 239, 551, 796
MboI GATC 3 cut(s) 237, 549, 794
MboII GAAGA 1 cut(s) 1001
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 2 cut(s) 885, 1065
MluCI AATT 9 cut(s) 50, 439, 453, 537, 631, 789, 812, 835, 976
MlyI GAGTC 3 cut(s) 36, 502, 979
MnlI CCTC 2 cut(s) 735, 742
MseI TTAA 2 cut(s) 83, 260
MspA1I CMGCKG 1 cut(s) 952
MspCI CTTAAG 1 cut(s) 259
MspI CCGG 2 cut(s) 72, 386
MspR9I CCNGG 2 cut(s) 317, 386
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 958
NciI CCSGG 1 cut(s) 386
NcoI CCATGG 1 cut(s) 916
NdeII GATC 3 cut(s) 237, 549, 794
NlaIII CATG 5 cut(s) 286, 535, 550, 920, 1055
NlaIV GGNNCC 4 cut(s) 19, 775, 869, 922
NmuCI GTSAC 1 cut(s) 623
NspI RCATGY 1 cut(s) 286
PciI ACATGT 1 cut(s) 282
PfeI GAWTC 2 cut(s) 389, 850
PfoI TCCNGGA 1 cut(s) 384
PkrI GCNGC 2 cut(s) 675, 951
PleI GAGTC 3 cut(s) 36, 502, 978
PpsI GAGTC 3 cut(s) 36, 502, 978
PscI ACATGT 1 cut(s) 282
Psp124BI GAGCTC 1 cut(s) 1065
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 4 cut(s) 19, 775, 869, 922
PspPI GGNCC 2 cut(s) 449, 521
PsuI RGATCY 1 cut(s) 237
PvuII CAGCTG 1 cut(s) 952
RsaI GTAC 2 cut(s) 19, 276
RsaNI GTAC 2 cut(s) 18, 275
SacI GAGCTC 1 cut(s) 1065
SalI GTCGAC 1 cut(s) 39
SaqAI TTAA 2 cut(s) 83, 260
SatI GCNGC 2 cut(s) 674, 950
Sau3AI GATC 3 cut(s) 237, 549, 794
Sau96I GGNCC 2 cut(s) 449, 521
ScaI AGTACT 1 cut(s) 276
SchI GAGTC 3 cut(s) 36, 502, 979
ScrFI CCNGG 2 cut(s) 317, 386
SduI GDGCHC 2 cut(s) 885, 1065
SfaNI GCATC 2 cut(s) 344, 439
SinI GGWCC 2 cut(s) 449, 521
SmlI CTYRAG 3 cut(s) 259, 686, 895
SmoI CTYRAG 3 cut(s) 259, 686, 895
Sse9I AATT 9 cut(s) 50, 439, 453, 537, 631, 789, 812, 835, 976
SspI AATATT 1 cut(s) 466
SspMI CTAG 4 cut(s) 159, 719, 855, 962
SstI GAGCTC 1 cut(s) 1065
StyD4I CCNGG 2 cut(s) 315, 384
StyI CCWWGG 1 cut(s) 916
TaaI ACNGT 2 cut(s) 561, 682
TaqI TCGA 4 cut(s) 40, 433, 848, 1084
TasI AATT 9 cut(s) 50, 439, 453, 537, 631, 789, 812, 835, 976
TatI WGTACW 1 cut(s) 274
TfiI GAWTC 2 cut(s) 389, 850
Tru1I TTAA 2 cut(s) 83, 260
Tru9I TTAA 2 cut(s) 83, 260
TscAI CASTG 3 cut(s) 523, 571, 804
TseFI GTSAC 1 cut(s) 623
TseI GCWGC 2 cut(s) 673, 949
Tsp45I GTSAC 1 cut(s) 623
TspDTI ATGAA 2 cut(s) 17, 1040
TspRI CASTG 3 cut(s) 523, 571, 804
Vha464I CTTAAG 1 cut(s) 259
VneI GTGCAC 1 cut(s) 881
VpaK11BI GGWCC 2 cut(s) 449, 521
XapI RAATTY 1 cut(s) 812
XceI RCATGY 1 cut(s) 286
XmiI GTMKAC 1 cut(s) 40
XspI CTAG 4 cut(s) 159, 719, 855, 962
ZrmI AGTACT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.