RLG00000001257

Receptor protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
N/A
Physical Location & Seq
Forward (+)
13032775 .. 13033299
525 bp
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UTR
Exon/CDS
Intron
RLM00000001257

Sequence Viewer

Length: 402 bp
ATGTGGGGATATTGCTCAGAGGGAAAGCACAGGCTTCTTGTTTATGAGTACATGGAGCATGGTTCCTTGGCACAGAAGTTAGCTTCCCATGAGCTTGATTGGGGGATGAGGTTTGAGATTGTTGTCGGCACTGCAAAGGGTCTAGCTTATTTGCATGAAGAGTGCTTGGAGTGGAGGATACGAGGAACCAGAGGTTACATTGCTCTAGAGTGGGTGTATAATCTTCCCATCACATCCAAAGTGGATGTATACAGCTATGGAGTGGTTGTATTAGAGATGGTGACCGGAAAGAACCCGACAATGGATGTGGAAATCAGTGATGGTGAGCAGAGAAGACTCATTATGTGGGTGAGGGAGAAACTAAATGGAACTGAAATTGCGTCAGAATCGGAGAGATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

134

Amino Acids

15.39

Weight (kDa)

5.39

Isoelectric Point (pI)

18.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 54 2.2e-06 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 60 - 108 7.8e-09 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 66 - 105 1e-05 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 249
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 301
AluBI AGCT 4 cut(s) 83, 94, 146, 255
AluI AGCT 4 cut(s) 83, 94, 146, 255
AsuHPI GGTGA 3 cut(s) 292, 335, 361
BbsI GAAGAC 1 cut(s) 340
BccI CCATC 3 cut(s) 236, 271, 314
BciVI GTATCC 1 cut(s) 171
BfaI CTAG 2 cut(s) 143, 206
BfuI GTATCC 1 cut(s) 171
BmiI GGNNCC 2 cut(s) 64, 187
BpiI GAAGAC 1 cut(s) 340
BsaJI CCNNGG 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 4 cut(s) 111, 233, 250, 310
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 30
BsiSI CCGG 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 301
Bsp143I GATC 1 cut(s) 395
BspCNI CTCAG 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 64, 187
BsrDI GCAATG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 1 cut(s) 395
BssNAI GTATAC 1 cut(s) 250
BssT1I CCWWGG 1 cut(s) 66
Bst1107I GTATAC 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 16
BstEII GGTNACC 1 cut(s) 280
BstF5I GGATG 4 cut(s) 111, 233, 250, 310
BstKTI GATC 1 cut(s) 398
BstMBI GATC 1 cut(s) 395
BstPI GGTNACC 1 cut(s) 280
BstV2I GAAGAC 1 cut(s) 340
BstZ17I GTATAC 1 cut(s) 250
BsuI GTATCC 1 cut(s) 171
BtsCI GGATG 4 cut(s) 111, 233, 250, 310
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 2 cut(s) 129, 322
CseI GACGC 1 cut(s) 369
Csp6I GTAC 1 cut(s) 49
CspCI CAANNNNNGTGG 2 cut(s) 288, 323
CviAII CATG 4 cut(s) 52, 59, 89, 155
CviJI RGCY 5 cut(s) 34, 83, 94, 146, 255
CviKI_1 RGCY 5 cut(s) 34, 83, 94, 146, 255
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 16
DpnI GATC 1 cut(s) 397
DpnII GATC 1 cut(s) 395
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 66
Eco91I GGTNACC 1 cut(s) 280
EcoO65I GGTNACC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 4 cut(s) 55, 62, 92, 158
FatI CATG 4 cut(s) 51, 58, 88, 154
FblI GTMKAC 1 cut(s) 249
FokI GGATG 4 cut(s) 118, 220, 257, 317
FspBI CTAG 2 cut(s) 143, 206
HapII CCGG 1 cut(s) 285
HgaI GACGC 1 cut(s) 369
Hin1II CATG 4 cut(s) 55, 62, 92, 158
HinfI GANTC 2 cut(s) 336, 386
HpaII CCGG 1 cut(s) 285
HphI GGTGA 3 cut(s) 292, 335, 361
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 3 cut(s) 19, 385, 391
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 250
HpyCH4V TGCA 2 cut(s) 134, 154
HpyF3I CTNAG 1 cut(s) 16
Hsp92II CATG 4 cut(s) 55, 62, 92, 158
Kzo9I GATC 1 cut(s) 395
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 3 cut(s) 16, 202, 298
MaeI CTAG 2 cut(s) 143, 206
MaeIII GTNAC 2 cut(s) 194, 280
MalI GATC 1 cut(s) 397
MboI GATC 1 cut(s) 395
MboII GAAGA 3 cut(s) 170, 215, 345
MluCI AATT 1 cut(s) 375
MlyI GAGTC 1 cut(s) 330
MnlI CCTC 6 cut(s) 13, 102, 168, 176, 185, 345
MspI CCGG 1 cut(s) 285
NdeII GATC 1 cut(s) 395
NlaIII CATG 4 cut(s) 55, 62, 92, 158
NlaIV GGNNCC 2 cut(s) 64, 187
NmuCI GTSAC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 386
PleI GAGTC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 330
PspEI GGTNACC 1 cut(s) 280
PspN4I GGNNCC 2 cut(s) 64, 187
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
Sau3AI GATC 1 cut(s) 395
SchI GAGTC 1 cut(s) 330
SetI ASST 6 cut(s) 85, 96, 113, 148, 196, 257
Sse9I AATT 1 cut(s) 375
SspMI CTAG 2 cut(s) 143, 206
StyI CCWWGG 1 cut(s) 66
TasI AATT 1 cut(s) 375
TatI WGTACW 1 cut(s) 48
TfiI GAWTC 1 cut(s) 386
TscAI CASTG 2 cut(s) 136, 322
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 171
TspRI CASTG 2 cut(s) 136, 322
XbaI TCTAGA 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 2 cut(s) 143, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.